Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   L6410_RS07700 Genome accession   NZ_AP024276
Coordinates   1532621..1533664 (-) Length   347 a.a.
NCBI ID   WP_160864617.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1530322..1531650 1532621..1533664 flank 971


Gene organization within MGE regions


Location: 1530322..1533664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS07690 (SUT286_14920) - 1530394..1531650 (+) 1257 WP_237395183.1 ISL3 family transposase -
  L6410_RS07695 (SUT286_14930) amiF 1531689..1532624 (-) 936 WP_237395261.1 ABC transporter ATP-binding protein Regulator
  L6410_RS07700 (SUT286_14940) oppD 1532621..1533664 (-) 1044 WP_160864617.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38416.92 Da        Isoelectric Point: 4.9217

>NTDB_id=84488 L6410_RS07700 WP_160864617.1 1532621..1533664(-) (oppD) [Streptococcus parasuis strain SUT-286]
MNKETILQVENLNVTFHTYAGEVQAIRDVNFTLNKGETLAIVGESGSGKSVTTRTLMGLNAKNAHLSGKIHFKDKDLSEL
SESEWVKVRGNEIAMIFQDPMTSLDPTMTIGMQIAEPIILHEKVSKSEALKRALELMKKVGIPNAEEHIKDYPHQWSGGM
RQRAVIAIALAANPEILIADEPTTALDVTIQAQILNLMKEIQSQTQSSIIFITHDLGVVAGMADRVAVMYAGKIVEVGTV
EEVFYNPQHPYTWGLLNSMPTTETTSGSLESIPGTPPDLLNPPVGDAFAARNAYALDIDFEEQPPMFQISDSHYAATWLL
DERAPEITPPLAILKRWEKWNSKKEKQ

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=84488 L6410_RS07700 WP_160864617.1 1532621..1533664(-) (oppD) [Streptococcus parasuis strain SUT-286]
ATGAATAAAGAAACGATTTTACAGGTTGAAAACTTAAATGTTACCTTTCATACCTATGCCGGTGAAGTTCAGGCCATTCG
TGATGTGAATTTTACATTGAACAAGGGTGAAACTCTGGCTATTGTTGGAGAGTCAGGTTCAGGTAAATCAGTAACAACAC
GTACGCTAATGGGCTTAAATGCAAAAAATGCACATTTGTCAGGTAAGATTCATTTTAAAGATAAAGACTTGAGCGAGTTG
TCAGAGAGTGAGTGGGTAAAAGTTCGTGGAAATGAAATTGCCATGATTTTCCAAGATCCAATGACAAGTTTGGATCCAAC
AATGACAATCGGTATGCAAATTGCTGAGCCAATCATTTTACATGAAAAGGTATCCAAATCAGAGGCCTTGAAACGTGCCT
TGGAACTCATGAAAAAGGTTGGTATTCCAAATGCTGAAGAGCACATTAAAGATTATCCACATCAATGGTCAGGTGGGATG
CGTCAACGTGCAGTCATCGCGATTGCACTTGCAGCGAATCCAGAAATTCTAATTGCAGATGAACCAACAACTGCCTTAGA
CGTGACGATTCAAGCGCAAATTTTGAATTTGATGAAAGAAATTCAGTCTCAAACACAGTCTTCTATTATCTTTATTACCC
ATGATTTGGGTGTGGTAGCTGGTATGGCGGACCGTGTGGCTGTTATGTACGCAGGGAAGATTGTGGAAGTTGGAACGGTT
GAGGAAGTATTTTATAATCCGCAACATCCTTACACATGGGGGTTATTAAACTCTATGCCGACAACAGAGACTACTTCTGG
AAGTTTGGAATCCATTCCTGGAACTCCGCCAGATTTGTTGAACCCTCCTGTTGGAGATGCTTTTGCAGCCAGAAATGCAT
ATGCTCTCGATATTGATTTTGAAGAGCAACCGCCAATGTTCCAAATTTCAGATAGCCATTATGCAGCAACATGGTTGTTA
GATGAGCGAGCTCCTGAAATTACCCCACCGTTAGCAATCTTGAAACGTTGGGAAAAATGGAATAGTAAGAAGGAGAAACA
ATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.994

98.559

0.798
  amiE Streptococcus salivarius strain HSISS4

56.471

97.983

0.553
  amiE Streptococcus thermophilus LMG 18311

56.176

97.983

0.55
  amiE Streptococcus thermophilus LMD-9

56.176

97.983

0.55

Multiple sequence alignment