Detailed information NTG0084487

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: L6410_RS07695
• Genome accession: NZ_AP024276
• Coordinates: 1531689..1532624 (-)
• Length: 311 a.a.
• NCBI ID: WP_237395261.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain SUT-286
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1530322..1531650	1531689..1532624	flank	39

Gene organization within MGE regions

Location: 1530322..1532624

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L6410_RS07690 (SUT286_14920)	-	1530394..1531650 (+)	1257	WP_237395183.1	ISL3 family transposase	-
L6410_RS07695 (SUT286_14930)	amiF	1531689..1532624 (-)	936	WP_237395261.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35039.75 Da
• Isoelectric Point: 6.0122

>NTDB_id=84487 L6410_RS07695 WP_237395261.1 1531689..1532624(-) (amiF) [Streptococcus parasuis strain SUT-286]
MSENRKKLVELKNVSLTFNAGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRTILKLYDYNAGDILFDGQSISKL
SGKDLKEFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTSSKEERDERVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVRPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFVAHDLSMVKYISDRIGVMHWGKMLEIGTSDA
VYNDPIHPYTKSLLSAIPEPDPEFEKNRIHVEYDPSAELDGQERQMHEITPGHFVLATEEEAAAYRAERNK

Nucleotide

• Length: 936 bp

>NTDB_id=84487 L6410_RS07695 WP_237395261.1 1531689..1532624(-) (amiF) [Streptococcus parasuis strain SUT-286]
ATGAGCGAAAATAGAAAAAAACTCGTTGAACTAAAAAATGTTTCATTGACTTTTAATGCAGGTAAGAAAAACGAAGTTAA
AGCCATTGACAATGTTTCCTTTGACATTTATGAAGGAGAGGTCTTTGGTCTCGTTGGTGAATCTGGGTCAGGGAAGACAA
CGGTTGGCCGTACAATTTTAAAGTTGTATGACTATAATGCTGGTGATATTCTCTTTGATGGCCAGTCTATTTCAAAGCTT
TCTGGAAAAGATTTGAAAGAATTTCGAAAAGATGCACAAATGATTTTCCAAGATCCTCAAGCTAGTTTGAATGGTCGTAT
GAAAATCAGAGATATCGTTGCAGAAGGTTTGGATATTCACGGCTTGACTTCTTCAAAAGAAGAACGGGATGAGCGTGTTC
AACATTTATTGGATTTAGTCGGTTTAAATAAGGATCATTTAACGCGTTATCCGCATGAGTTTTCAGGTGGACAACGACAA
CGGATTGGTATTGCTCGTGCCTTAGCAGTTCGTCCAAAATTCATTATTGCTGACGAACCAATCTCAGCCTTAGATGTATC
CATCCAAGCACAAGTTGTTAATTTGATGCAAAAATTGCAGAGAGAACAAGGTCTAACCTATCTTTTTGTTGCACACGATT
TATCAATGGTTAAGTACATCTCTGACCGTATTGGTGTTATGCACTGGGGTAAAATGTTGGAAATTGGAACGTCGGATGCT
GTTTACAATGACCCAATTCATCCCTACACGAAGAGTTTGCTTTCTGCTATCCCTGAACCGGATCCAGAATTTGAAAAAAA
TCGTATCCATGTGGAATACGATCCAAGTGCTGAATTAGATGGTCAAGAACGTCAGATGCATGAGATTACGCCTGGTCACT
TTGTATTGGCTACAGAAGAAGAGGCTGCGGCATACCGCGCTGAACGAAACAAATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	52.597	99.035	0.521
amiF	Streptococcus thermophilus LMG 18311	52.273	99.035	0.518
amiF	Streptococcus salivarius strain HSISS4	51.948	99.035	0.514