Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   QRT00_RS04510 Genome accession   NZ_CP127868
Coordinates   880899..882161 (+) Length   420 a.a.
NCBI ID   WP_286120538.1    Uniprot ID   -
Organism   Pediococcus pentosaceus strain SMFM2016-YK1     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 875899..887161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT00_RS04485 tsf 876755..877633 (+) 879 WP_002833606.1 translation elongation factor Ts -
  QRT00_RS04490 pyrH 877787..878512 (+) 726 WP_002833607.1 UMP kinase -
  QRT00_RS04495 frr 878512..879072 (+) 561 WP_002833608.1 ribosome recycling factor -
  QRT00_RS04500 - 879330..880079 (+) 750 WP_259769711.1 isoprenyl transferase -
  QRT00_RS04505 - 880090..880875 (+) 786 WP_029257928.1 phosphatidate cytidylyltransferase -
  QRT00_RS04510 eeP 880899..882161 (+) 1263 WP_286120538.1 RIP metalloprotease RseP Regulator
  QRT00_RS04515 - 882189..883904 (+) 1716 WP_002833612.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46364.95 Da        Isoelectric Point: 9.6829

>NTDB_id=844877 QRT00_RS04510 WP_286120538.1 880899..882161(+) (eeP) [Pediococcus pentosaceus strain SMFM2016-YK1]
MITTIITFIVVFLILVVVHEYGHFVAAKKSGILVREFSIGMGPKIVDLKRNGTTYTLRILPIGGYVRMAGLDEQEDELKA
GQHVTLTTDNTGQVTIINTSSKVQNLMGIPVDVTSFDLQDKLFIEGYENGNEDEVKHFEIDHDASIVESDGTEVRIAPRD
VQFQSAKIWQRLITNFAGPFNNFVLAIVVFAIMGVMQGAVPANTNQVQVVENGVAQKAGIKNNDRIVRVEGQKTDNWSQL
SKAVSARPNQKTTLEVLRQKQTKKITLTPKLASNGSKKVGMIGVQSSMTTNLGKRVLYGFTGTWQMAKSLFTTLGQMLHG
FSLNDLGGPVAIYATTSQATHQGFMSVLYVLGFLSLNLGIVNLLPIPALDGGKILLNLVEMIRRKPLKVETENVITLIGF
GFLMILMLLVTWNDIQRYFF

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=844877 QRT00_RS04510 WP_286120538.1 880899..882161(+) (eeP) [Pediococcus pentosaceus strain SMFM2016-YK1]
ATGATAACTACGATTATTACCTTTATTGTTGTATTTTTAATTTTAGTTGTTGTCCATGAGTATGGGCATTTTGTTGCTGC
TAAAAAGTCCGGTATTTTAGTTCGTGAATTTTCAATTGGGATGGGTCCTAAAATTGTTGATTTGAAGCGTAATGGAACTA
CGTATACTTTACGGATTCTTCCCATTGGTGGTTATGTTCGAATGGCGGGACTCGATGAACAAGAAGATGAATTGAAAGCG
GGACAACATGTTACATTAACCACGGATAATACTGGACAAGTGACGATTATTAATACTTCTAGTAAAGTTCAAAATTTGAT
GGGCATTCCAGTTGATGTAACCAGTTTTGACTTACAAGATAAATTATTCATTGAAGGTTATGAAAATGGTAACGAAGACG
AAGTTAAACATTTTGAAATTGATCATGATGCATCGATAGTCGAATCCGACGGGACAGAAGTTCGAATTGCACCGCGTGAT
GTTCAATTTCAATCTGCTAAGATTTGGCAGCGACTAATTACTAATTTTGCTGGACCATTTAATAATTTTGTTTTGGCCAT
CGTTGTTTTTGCGATAATGGGAGTTATGCAGGGAGCAGTTCCGGCTAATACTAACCAAGTACAAGTCGTTGAAAATGGTG
TTGCTCAAAAAGCAGGAATTAAAAATAATGATCGTATTGTTAGAGTTGAAGGACAAAAAACAGATAATTGGAGTCAACTA
TCTAAGGCAGTTTCAGCTCGTCCAAATCAAAAAACGACTTTAGAAGTATTACGTCAAAAGCAAACAAAGAAAATCACATT
AACACCTAAGTTAGCAAGTAATGGTAGTAAAAAAGTGGGTATGATTGGTGTTCAATCATCCATGACAACTAATTTAGGTA
AGCGAGTTTTATATGGTTTCACTGGAACTTGGCAAATGGCTAAGAGTTTGTTTACCACTTTAGGACAGATGCTACATGGC
TTTAGTTTGAATGATTTAGGCGGTCCTGTTGCAATTTATGCCACGACCTCTCAAGCTACCCATCAAGGCTTCATGTCAGT
GCTGTATGTGCTTGGTTTTCTATCCCTAAACTTGGGGATTGTTAACTTATTACCAATTCCAGCTTTGGATGGAGGAAAAA
TTCTCCTAAATCTCGTTGAAATGATTCGAAGAAAACCTTTAAAAGTTGAAACCGAAAATGTGATTACGCTAATTGGCTTT
GGATTTTTAATGATATTAATGCTGTTAGTTACTTGGAATGATATTCAAAGATACTTTTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(208-258)

Peptidase family M50 (Peptidase_M50)

(7-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

48

100

0.486
  eeP Streptococcus thermophilus LMG 18311

48

100

0.486