Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   QRT02_RS04535 Genome accession   NZ_CP127867
Coordinates   870549..871811 (+) Length   420 a.a.
NCBI ID   WP_286103056.1    Uniprot ID   -
Organism   Pediococcus pentosaceus strain SMFM2016-WK1     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 865549..876811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT02_RS04510 tsf 866405..867283 (+) 879 WP_002833606.1 translation elongation factor Ts -
  QRT02_RS04515 pyrH 867437..868162 (+) 726 WP_002833607.1 UMP kinase -
  QRT02_RS04520 frr 868162..868722 (+) 561 WP_002833608.1 ribosome recycling factor -
  QRT02_RS04525 - 868980..869729 (+) 750 WP_011673316.1 isoprenyl transferase -
  QRT02_RS04530 - 869740..870525 (+) 786 WP_029257928.1 phosphatidate cytidylyltransferase -
  QRT02_RS04535 eeP 870549..871811 (+) 1263 WP_286103056.1 RIP metalloprotease RseP Regulator
  QRT02_RS04540 - 871839..873554 (+) 1716 WP_002833612.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46324.89 Da        Isoelectric Point: 9.6829

>NTDB_id=844854 QRT02_RS04535 WP_286103056.1 870549..871811(+) (eeP) [Pediococcus pentosaceus strain SMFM2016-WK1]
MITTIITFIVVFLILVVVHEYGHFVAAKKSGILVREFSIGMGSKIVDLKRNGTTYTLRILPIGGYVRMAGLDEQEDELKA
GQHVTLTTDNTGQVTIINTSSKVQNLMGIPVDVTSFDLQDKLFIEGYENGNEDEVKHFEIDHDASIVESDGTEVRIAPRD
VQFQSAKIWQRLITNFAGPFNNFVLAIVVFAIMGVMQGAVPANTNQVQVVENGVAQKAGIKNNDRIVRVEGQKTDNWSQL
SKAVSARPNQKTTLEVLRQKQTKKITLTPKLASNGSKKVGMIGVQSSMTTNLGKRVLYGFTGTWQMAKSLFTALGQMLHG
FSLNDLGGPVAIYATTSQATHQGFMSVLYVLGFLSLNLGIVNLLPIPALDGGKILLNLVEMIRRKPLKVETENVITLIGF
GFLMILMLLVTWNDIQRYFF

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=844854 QRT02_RS04535 WP_286103056.1 870549..871811(+) (eeP) [Pediococcus pentosaceus strain SMFM2016-WK1]
ATGATAACTACGATTATTACCTTTATTGTTGTATTTTTAATTTTAGTTGTTGTCCATGAGTATGGGCATTTTGTTGCTGC
TAAAAAGTCCGGTATTTTAGTTCGTGAATTTTCAATTGGGATGGGTTCTAAAATTGTTGATTTGAAGCGTAATGGAACTA
CGTATACTTTACGGATTCTTCCCATTGGTGGTTATGTTCGAATGGCGGGACTCGATGAACAAGAAGATGAATTGAAAGCG
GGACAACATGTTACATTAACCACGGATAATACTGGACAAGTGACGATTATTAATACTTCTAGTAAAGTTCAAAATTTGAT
GGGCATTCCAGTTGATGTAACCAGTTTTGACTTACAAGATAAATTATTCATTGAAGGTTATGAAAATGGTAACGAAGACG
AAGTTAAACATTTTGAAATTGATCATGATGCATCGATAGTCGAATCCGACGGGACAGAAGTTCGAATTGCACCGCGTGAT
GTTCAATTTCAATCTGCTAAGATTTGGCAGCGACTAATTACTAATTTTGCTGGACCATTTAATAATTTTGTTTTGGCCAT
CGTTGTTTTTGCGATAATGGGAGTTATGCAGGGAGCAGTTCCGGCTAATACTAACCAAGTACAAGTCGTTGAAAATGGTG
TTGCTCAAAAAGCAGGAATTAAAAATAATGATCGTATTGTTAGAGTTGAAGGACAAAAAACAGATAATTGGAGTCAATTA
TCTAAGGCAGTTTCAGCTCGTCCAAATCAAAAAACGACTTTAGAAGTATTACGTCAAAAGCAAACAAAGAAAATCACATT
AACACCTAAGTTAGCAAGTAATGGTAGTAAAAAAGTGGGTATGATTGGTGTTCAATCATCCATGACAACTAATTTAGGTA
AGCGAGTTTTATATGGTTTCACTGGAACTTGGCAAATGGCTAAGAGTTTGTTTACCGCTTTAGGACAGATGCTACATGGC
TTTAGTTTGAATGATTTAGGCGGTCCTGTTGCAATTTATGCCACGACCTCTCAAGCCACCCATCAAGGCTTCATGTCAGT
GCTGTATGTGCTTGGTTTTCTATCCCTAAACTTGGGGATTGTTAACTTATTACCAATTCCAGCTTTGGATGGAGGAAAAA
TTCTCCTAAATCTCGTTGAAATGATTCGAAGAAAACCTTTAAAAGTTGAAACCGAAAATGTGATTACGCTAATTGGCTTT
GGATTTTTAATGATATTAATGCTGTTAGTTACTTGGAATGATATTCAAAGATACTTTTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(208-258)

Peptidase family M50 (Peptidase_M50)

(7-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

47.642

100

0.481
  eeP Streptococcus thermophilus LMG 18311

47.642

100

0.481