Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   QRS99_RS04305 Genome accession   NZ_CP127866
Coordinates   849924..851186 (+) Length   420 a.a.
NCBI ID   WP_061812048.1    Uniprot ID   A0A1Y0VW88
Organism   Pediococcus pentosaceus strain SMFM2016-NK1     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 844924..856186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRS99_RS04280 tsf 845780..846658 (+) 879 WP_002833606.1 translation elongation factor Ts -
  QRS99_RS04285 pyrH 846812..847537 (+) 726 WP_002833607.1 UMP kinase -
  QRS99_RS04290 frr 847537..848097 (+) 561 WP_060743698.1 ribosome recycling factor -
  QRS99_RS04295 - 848355..849104 (+) 750 WP_094104512.1 isoprenyl transferase -
  QRS99_RS04300 - 849115..849900 (+) 786 WP_041527001.1 phosphatidate cytidylyltransferase -
  QRS99_RS04305 eeP 849924..851186 (+) 1263 WP_061812048.1 RIP metalloprotease RseP Regulator
  QRS99_RS04310 - 851214..852929 (+) 1716 WP_115154772.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46346.98 Da        Isoelectric Point: 9.6829

>NTDB_id=844830 QRS99_RS04305 WP_061812048.1 849924..851186(+) (eeP) [Pediococcus pentosaceus strain SMFM2016-NK1]
MITTIITFIVVFLILVVVHEYGHFVAAKKSGILVREFSIGMGPKIVDLKRNGTTYTLRILPIGGYVRMAGLDEQEDELKA
GQHVTLTTDNTGQVTIINTSSKVQNLMGIPVDVTSFDLQDKLFIEGYENGNEDEVKHFEIDHDASIVESDGTEVRIAPRD
VQFQSAKIWQRLITNFAGPFNNFVLAIVVFAIMGVMQGAVPANTNQVQVVENGVAQKAGIKNNDRIVRVEGQKTDNWSQL
SKAVSARPNQKTTLEVLRQKQIKKITLTPKLASNGSKKVGMIGVQSSMTTNLGKRVLYGFTGTWQMAKSLFTALGQMLHG
FSLNDLGGPVAIYATTSQATHQGFMSVLYVLGFLSLNLGIVNLLPIPALDGGKILLNLVEMIRRKPLKVETENVITLIGF
GFLMILMLLVTWNDIQRYFF

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=844830 QRS99_RS04305 WP_061812048.1 849924..851186(+) (eeP) [Pediococcus pentosaceus strain SMFM2016-NK1]
ATGATAACTACGATTATTACCTTTATTGTTGTATTTTTAATTTTAGTTGTTGTCCATGAGTATGGGCATTTTGTTGCGGC
TAAAAAGTCCGGTATTTTAGTTCGTGAATTTTCAATTGGGATGGGTCCTAAAATTGTTGATTTGAAGCGTAATGGAACTA
CGTATACTTTACGGATTCTTCCCATTGGTGGTTATGTTCGAATGGCGGGACTCGATGAACAAGAAGATGAATTGAAAGCG
GGACAACATGTTACATTAACCACGGATAATACTGGACAAGTGACGATTATTAATACTTCTAGTAAAGTTCAAAATTTGAT
GGGCATTCCAGTTGATGTAACCAGTTTTGACTTACAAGATAAATTATTCATTGAAGGTTATGAAAATGGTAACGAAGACG
AAGTTAAACATTTTGAAATTGATCATGATGCATCGATAGTCGAATCCGACGGGACAGAAGTTCGAATTGCACCGCGTGAT
GTTCAATTTCAATCTGCTAAGATTTGGCAGCGACTAATTACTAATTTTGCTGGACCATTTAATAATTTTGTTTTGGCCAT
CGTTGTTTTTGCGATAATGGGAGTTATGCAGGGAGCAGTTCCGGCTAATACTAACCAAGTACAAGTCGTTGAAAATGGTG
TTGCTCAAAAAGCAGGAATTAAAAATAATGATCGTATTGTTAGAGTTGAAGGACAAAAAACAGATAATTGGAGTCAATTA
TCTAAGGCAGTTTCAGCTCGTCCAAATCAAAAAACGACTTTAGAAGTATTACGTCAAAAGCAAATAAAGAAAATCACATT
AACACCTAAGTTAGCAAGTAATGGTAGTAAAAAAGTGGGTATGATTGGTGTTCAATCATCCATGACAACTAATTTAGGTA
AGCGAGTTTTATATGGTTTCACTGGAACTTGGCAAATGGCTAAGAGTTTGTTTACCGCTTTAGGACAGATGCTACATGGC
TTTAGCTTGAATGATTTAGGCGGTCCTGTTGCAATTTATGCCACGACCTCTCAAGCTACCCATCAAGGCTTCATGTCAGT
GCTGTATGTGCTAGGTTTTCTATCCCTAAACTTGGGGATTGTTAACTTATTACCAATTCCAGCTTTGGATGGAGGAAAAA
TTCTCCTAAATCTCGTTGAAATGATTCGAAGAAAACCTTTAAAAGTTGAAACCGAAAATGTGATTACGCTAATTGGCTTT
GGATTTTTAATGATATTAATGCTGTTAGTTACTTGGAATGATATTCAAAGATACTTTTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(208-258)

Peptidase family M50 (Peptidase_M50)

(7-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0VW88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

47.877

100

0.483
  eeP Streptococcus thermophilus LMD-9

47.877

100

0.483