Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   L6410_RS05565 Genome accession   NZ_AP024276
Coordinates   1111860..1113086 (-) Length   408 a.a.
NCBI ID   WP_024404609.1    Uniprot ID   A0A6L8MUB6
Organism   Streptococcus parasuis strain SUT-286     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1106860..1118086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS05535 (SUT286_10530) - 1107014..1107883 (+) 870 WP_237395065.1 DMT family transporter -
  L6410_RS05540 - 1107936..1108558 (-) 623 Protein_1059 helicase SNF2 -
  L6410_RS05545 (SUT286_10550) - 1108554..1108757 (-) 204 Protein_1060 helix-turn-helix domain-containing protein -
  L6410_RS05550 (SUT286_10560) lepA 1108847..1110679 (-) 1833 WP_237395066.1 translation elongation factor 4 -
  L6410_RS05555 (SUT286_10570) ndk 1110777..1111190 (-) 414 WP_237395067.1 nucleoside-diphosphate kinase -
  L6410_RS05560 (SUT286_10580) yihA 1111212..1111799 (-) 588 WP_024392204.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  L6410_RS05565 (SUT286_10590) clpX 1111860..1113086 (-) 1227 WP_024404609.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  L6410_RS05570 (SUT286_10600) - 1113284..1113796 (-) 513 WP_024392207.1 dihydrofolate reductase -
  L6410_RS05575 (SUT286_10610) - 1114098..1114937 (-) 840 WP_237395068.1 thymidylate synthase -
  L6410_RS05580 (SUT286_10620) - 1114990..1115292 (-) 303 WP_024392209.1 hypothetical protein -
  L6410_RS05585 (SUT286_10630) - 1115305..1115583 (-) 279 WP_172024832.1 hypothetical protein -
  L6410_RS05590 (SUT286_10640) - 1115707..1116666 (-) 960 WP_024404604.1 ROK family glucokinase -
  L6410_RS05595 (SUT286_10650) - 1116827..1117162 (-) 336 WP_160863524.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45506.05 Da        Isoelectric Point: 4.6050

>NTDB_id=84478 L6410_RS05565 WP_024404609.1 1111860..1113086(-) (clpX) [Streptococcus parasuis strain SUT-286]
MAVKHTQELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLIRIL
TEPKNALVKQYQTLLSYDNVELEFDQDALEEIAKKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKRVRVTKDAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=84478 L6410_RS05565 WP_024404609.1 1111860..1113086(-) (clpX) [Streptococcus parasuis strain SUT-286]
ATGGCTGTTAAGCATACACAAGAGCTTATCTATTGCTCATTTTGTGGTAAAAATCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAATAATGTTTTCATTTGTAATGAGTGTGTTGAGTTAGCTCAAGAAATCATTCGTGAAGAATTGGCTGAAGAAGTAC
TGACAGATTTGGCAGACACACCAAAGCCACAAGAATTACTCAATATTTTAAACAATTATGTCATTGGACAAGATCGTGCT
AAACGTGCATTGGCAGTGGCTGTTTATAATCACTACAAACGTATTAATTTCCAAGATAGTCGCGATGAAAACGATGTTGA
TTTGCAAAAATCTAACATCTTGATGATTGGTCCAACTGGATCCGGTAAAACATTCTTAGCACAAACCTTAGCTAAGAGTT
TGAATGTACCTTTCGCGATTGCAGATGCAACTGCGCTGACTGAGGCTGGTTATGTGGGTGAAGATGTTGAAAACATTTTA
CTTAAATTATTGCAGGCTGCAGATTTTAACATTGACCGTGCTGAAAGAGGTATCATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGTGACGTCTCGGGTGAAGGTGTCCAACAAGCTCTCTTAAAAATTATTG
AAGGAACCGTAGCTAGTGTACCTCCACAAGGTGGACGAAAACACCCTAATCAAGAAATGATTCACGTCGATACGAAAAAC
ATTCTTTTCATCGTTGGCGGTGCGTTTGATGGTATCGAGGAAATTGTTAAGCAACGATTAGGAGAGAAAATCATTGGTTT
TGGTCAAAACAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCTGATGATATTCAAAAATTTGGTA
TTATTCCTGAATTGATTGGACGATTACCTGTTTTTGCAGCCTTAGATCAATTAACGACAGAGGATTTGATTCGTATTTTG
ACTGAGCCGAAGAATGCTTTGGTAAAACAGTACCAAACTCTTTTATCCTACGATAATGTGGAGTTAGAATTTGACCAGGA
TGCCTTGGAGGAAATTGCCAAAAAGGCTATTGAACGGAAAACAGGTGCACGGGGACTTCGTTCGATTATTGAAGAAACCA
TGATGGATGTGATGTTTGAAGTTCCTAGTCAAGAGAATGTAAAACGTGTTCGTGTTACAAAAGATGCAGTAGATGGTAAG
GAAAAACCTTTGCTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L8MUB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.619

100

0.838
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.529

0.566

Multiple sequence alignment