Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QRT07_RS15100 Genome accession   NZ_CP127846
Coordinates   3233682..3234794 (-) Length   370 a.a.
NCBI ID   WP_020904434.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP16     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3228682..3239794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT07_RS15070 (QRT07_15070) hemF 3229143..3230060 (-) 918 WP_025636136.1 oxygen-dependent coproporphyrinogen oxidase -
  QRT07_RS15075 (QRT07_15075) - 3230108..3230665 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  QRT07_RS15080 (QRT07_15080) purE 3230865..3231350 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QRT07_RS15085 (QRT07_15085) - 3231355..3232482 (+) 1128 WP_025636139.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QRT07_RS15090 (QRT07_15090) - 3232552..3233121 (-) 570 WP_025508597.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  QRT07_RS15095 (QRT07_15095) - 3233200..3233679 (-) 480 WP_005461440.1 DUF494 family protein -
  QRT07_RS15100 (QRT07_15100) dprA 3233682..3234794 (-) 1113 WP_020904434.1 DNA-processing protein DprA Machinery gene
  QRT07_RS15105 (QRT07_15105) - 3234778..3235872 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  QRT07_RS15110 (QRT07_15110) def 3236011..3236529 (+) 519 WP_005461416.1 peptide deformylase -
  QRT07_RS15115 (QRT07_15115) fmt 3236563..3237510 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  QRT07_RS15120 (QRT07_15120) rsmB 3237591..3238874 (+) 1284 WP_015297514.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39980.61 Da        Isoelectric Point: 6.5005

>NTDB_id=844706 QRT07_RS15100 WP_020904434.1 3233682..3234794(-) (dprA) [Vibrio parahaemolyticus strain VP16]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTHKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITTRYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=844706 QRT07_RS15100 WP_020904434.1 3233682..3234794(-) (dprA) [Vibrio parahaemolyticus strain VP16]
ATGAAACCACGCAATAATGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGC
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCACGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAGAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.324

100

0.843
  dprA Vibrio cholerae strain A1552

58.378

100

0.584
  dprA Glaesserella parasuis strain SC1401

46.649

100

0.47
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

38.619

100

0.408
  dprA Neisseria meningitidis MC58

38.619

100

0.408
  dprA Neisseria gonorrhoeae MS11

36.504

100

0.384
  dprA Neisseria gonorrhoeae strain FA1090

36.247

100

0.381