Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QRT07_RS14470 Genome accession   NZ_CP127846
Coordinates   3103187..3103912 (+) Length   241 a.a.
NCBI ID   WP_025636204.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3098187..3108912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT07_RS14455 (QRT07_14455) - 3099290..3101611 (+) 2322 WP_286089426.1 Tex family protein -
  QRT07_RS14460 (QRT07_14460) - 3101747..3102211 (-) 465 WP_005459035.1 hypothetical protein -
  QRT07_RS14465 (QRT07_14465) bioH 3102335..3103102 (-) 768 WP_025535414.1 pimeloyl-ACP methyl ester esterase BioH -
  QRT07_RS14470 (QRT07_14470) comF 3103187..3103912 (+) 726 WP_025636204.1 amidophosphoribosyltransferase Machinery gene
  QRT07_RS14475 (QRT07_14475) nfuA 3104010..3104594 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  QRT07_RS14480 (QRT07_14480) nudE 3104815..3105384 (+) 570 WP_025636203.1 ADP compounds hydrolase NudE -
  QRT07_RS14485 (QRT07_14485) cysQ 3105426..3106253 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QRT07_RS14490 (QRT07_14490) - 3106539..3107300 (-) 762 WP_020904372.1 type II secretion system protein N -
  QRT07_RS14495 (QRT07_14495) - 3107302..3107793 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27706.86 Da        Isoelectric Point: 8.8474

>NTDB_id=844705 QRT07_RS14470 WP_025636204.1 3103187..3103912(+) (comF) [Vibrio parahaemolyticus strain VP16]
MLSHHWQNIMHRVLSSQCGLCHFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=844705 QRT07_RS14470 WP_025636204.1 3103187..3103912(+) (comF) [Vibrio parahaemolyticus strain VP16]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCACTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCTCTTATCACCACAGTGCCTTTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

48.739

98.755

0.481