Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QRT07_RS05120 Genome accession   NZ_CP127846
Coordinates   1083047..1084408 (+) Length   453 a.a.
NCBI ID   WP_011106018.1    Uniprot ID   A0A2R9VNB6
Organism   Vibrio parahaemolyticus strain VP16     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078047..1089408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT07_RS05100 (QRT07_05100) rsxB 1078526..1079122 (-) 597 WP_005480813.1 electron transport complex subunit RsxB -
  QRT07_RS05105 (QRT07_05105) rsxA 1079126..1079704 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  QRT07_RS05115 (QRT07_05115) uvrB 1080694..1082724 (+) 2031 WP_025634751.1 excinuclease ABC subunit UvrB -
  QRT07_RS05120 (QRT07_05120) luxO 1083047..1084408 (+) 1362 WP_011106018.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  QRT07_RS05125 (QRT07_05125) luxU 1084411..1084749 (+) 339 WP_025538680.1 quorum-sensing phosphorelay protein LuxU -
  QRT07_RS05130 (QRT07_05130) - 1084826..1085719 (-) 894 WP_017447831.1 YvcK family protein -
  QRT07_RS05135 (QRT07_05135) moaA 1086015..1087004 (+) 990 WP_005494502.1 GTP 3',8-cyclase MoaA -
  QRT07_RS05140 (QRT07_05140) moaB 1087107..1087619 (+) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  QRT07_RS05145 (QRT07_05145) moaC 1087646..1088125 (+) 480 WP_005488247.1 cyclic pyranopterin monophosphate synthase MoaC -
  QRT07_RS05150 (QRT07_05150) moaD 1088122..1088379 (+) 258 WP_025634752.1 molybdopterin synthase sulfur carrier subunit -
  QRT07_RS05155 (QRT07_05155) moaE 1088381..1088836 (+) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50481.75 Da        Isoelectric Point: 5.8861

>NTDB_id=844691 QRT07_RS05120 WP_011106018.1 1083047..1084408(+) (luxO) [Vibrio parahaemolyticus strain VP16]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLG
YMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPSVSKLIEPKAMTVSE
IMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=844691 QRT07_RS05120 WP_011106018.1 1083047..1084408(+) (luxO) [Vibrio parahaemolyticus strain VP16]
ATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCGCTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGG
TACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAATTCCAGATCTTATTCTTCTTGATCTTCGTCTGCCTGATATGA
CGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCATCCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATC
GATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGACTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTAC
GGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAAATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTA
TCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACCATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACT
GGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGCCATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGC
CATCAACTGTGCGGCCATACCTAAAGACTTAATCGAAAGTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGG
CAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGTGGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGAC
TTACAAACCAAATTATTGCGATTCATCCAAACCGGTACGTTCCAGAAAGTGGGCTCTTCAAAAATGAAGAGTGTGGACGT
GCGCTTCGTTTGTGCAACCAACCGAGACCCTTGGAAAGAAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTT
TATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAACGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGC
TACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTTTTCTCAAGAAGTGATTGATCGCTTTAACAGTTATGAGTGGCC
GGGTAACGTCCGACAACTACAAAACGTATTGCGTAATATCGTGGTGCTTAACAACGGCAAAGAAATTACGTTAGATATGT
TGCCACCGCCGCTGAATCAACCATTAGATAGGCCATCTGTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAG
ATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGAACAAGCGATTGAGGCGTGTGACGGTAATATTCCAAGAGCCGC
TGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCAAACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGT
AA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R9VNB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

98.896

0.865
  pilR Pseudomonas aeruginosa PAK

38.255

98.675

0.377