Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QRT07_RS03170 Genome accession   NZ_CP127846
Coordinates   650578..651192 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP16     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 645578..656192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT07_RS03160 (QRT07_03160) aceF 646868..648754 (+) 1887 WP_015297248.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  QRT07_RS03165 (QRT07_03165) lpdA 649023..650450 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  QRT07_RS03170 (QRT07_03170) opaR 650578..651192 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  QRT07_RS03175 (QRT07_03175) hpt 651511..652041 (+) 531 WP_005462585.1 hypoxanthine phosphoribosyltransferase -
  QRT07_RS03180 (QRT07_03180) can 652116..652784 (-) 669 WP_005462578.1 carbonate dehydratase -
  QRT07_RS03185 (QRT07_03185) - 653068..654738 (+) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  QRT07_RS03190 (QRT07_03190) - 654991..655908 (+) 918 WP_020835400.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=844689 QRT07_RS03170 WP_005479697.1 650578..651192(-) (opaR) [Vibrio parahaemolyticus strain VP16]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=844689 QRT07_RS03170 WP_005479697.1 650578..651192(-) (opaR) [Vibrio parahaemolyticus strain VP16]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTTGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701