Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   L6410_RS02605 Genome accession   NZ_AP024276
Coordinates   515635..516324 (+) Length   229 a.a.
NCBI ID   WP_024391133.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 510635..521324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS02580 (SUT286_04760) - 510965..512308 (+) 1344 WP_237395823.1 DEAD/DEAH box helicase -
  L6410_RS02585 (SUT286_04770) - 512327..512551 (+) 225 WP_024396428.1 DUF4059 family protein -
  L6410_RS02590 (SUT286_04780) trxB 512564..513481 (+) 918 WP_237395826.1 thioredoxin-disulfide reductase -
  L6410_RS02595 (SUT286_04790) - 513491..514030 (+) 540 WP_160863876.1 YceD family protein -
  L6410_RS02600 (SUT286_04800) gndA 514126..515553 (+) 1428 WP_237395827.1 NADP-dependent phosphogluconate dehydrogenase -
  L6410_RS02605 (SUT286_04810) covR 515635..516324 (+) 690 WP_024391133.1 response regulator transcription factor Regulator
  L6410_RS02610 (SUT286_04820) - 516404..517531 (+) 1128 WP_172041000.1 AI-2E family transporter -
  L6410_RS02615 (SUT286_04830) nrdR 517605..518096 (+) 492 WP_024391135.1 transcriptional regulator NrdR -
  L6410_RS02620 (SUT286_04840) - 518083..519234 (+) 1152 WP_237395828.1 replication initiation/membrane attachment protein -
  L6410_RS02625 (SUT286_04850) dnaI 519234..520133 (+) 900 WP_172024958.1 primosomal protein DnaI -
  L6410_RS02630 (SUT286_04860) - 520130..520843 (+) 714 WP_237395829.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26230.14 Da        Isoelectric Point: 5.4135

>NTDB_id=84466 L6410_RS02605 WP_024391133.1 515635..516324(+) (covR) [Streptococcus parasuis strain SUT-286]
MAKKILIAGKERNLSHFVSMELQKKEYIVDYASTGKEALSLAHETDFDLVLMSFQLSDMSSKELAKELLAIKPATVMIVV
VEPTEVAEHGEDVLTYAVFYVVKPFVISDLVEQISDIFRGRDFIETNCKQVHLHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDVPGQASYIRTVRGVGYTMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=84466 L6410_RS02605 WP_024391133.1 515635..516324(+) (covR) [Streptococcus parasuis strain SUT-286]
ATGGCTAAGAAAATTTTGATTGCTGGGAAAGAGCGTAATCTTTCACATTTTGTTTCCATGGAACTTCAGAAGAAGGAGTA
TATCGTTGATTATGCTTCAACAGGGAAAGAAGCTTTATCACTAGCTCATGAGACAGACTTTGATTTGGTTTTGATGAGTT
TCCAATTATCCGATATGTCCAGCAAGGAGTTGGCTAAGGAGCTTCTTGCAATCAAACCTGCTACGGTGATGATTGTAGTT
GTCGAACCAACAGAAGTGGCTGAACATGGGGAAGATGTATTGACGTATGCGGTATTTTACGTTGTGAAGCCATTTGTTAT
TAGTGACTTGGTGGAACAAATTTCCGATATTTTCCGTGGTAGAGATTTTATTGAAACAAATTGTAAACAGGTTCATTTGC
ATGCGGCCTATCGAGATTTAAAAGTTGATTTTCAAAACCGAACGGTCACACGGGGAGATGAGTTAATCAACTTGACGCGT
CGAGAATATGATTTGCTGGCGACATTGATGAATAGTCCAGAACCAGTTAGCCGAGAACAGCTTCTTGAACGAGTCTGGAA
GTATGAAGCGGCCTCTGAAACCAATGTTGTGGATGTCTATATCCGTTATCTTCGTGGAAAATTAGATGTTCCAGGACAGG
CTTCCTATATTCGGACGGTACGTGGTGTTGGCTATACCATGAGAGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.66

100

0.489
  covR Lactococcus lactis subsp. lactis strain DGCC12653

42.616

100

0.441

Multiple sequence alignment