Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QR297_RS06345 Genome accession   NZ_CP127845
Coordinates   1363498..1364133 (+) Length   211 a.a.
NCBI ID   WP_051099753.1    Uniprot ID   A0A0E9ZJ72
Organism   Pseudomonas shirazica strain HY376     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1358498..1369133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR297_RS06325 (QR297_06325) - 1358499..1359431 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  QR297_RS06330 (QR297_06330) - 1359428..1360207 (+) 780 WP_015269397.1 ABC transporter permease -
  QR297_RS06335 (QR297_06335) - 1360217..1360723 (-) 507 Protein_1234 DUF2062 domain-containing protein -
  QR297_RS06340 (QR297_06340) comA 1360866..1363079 (+) 2214 WP_189121685.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QR297_RS06345 (QR297_06345) exbB 1363498..1364133 (+) 636 WP_051099753.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QR297_RS06350 (QR297_06350) - 1364130..1364564 (+) 435 WP_013971564.1 biopolymer transporter ExbD -
  QR297_RS06355 (QR297_06355) lpxK 1364564..1365565 (+) 1002 WP_309673523.1 tetraacyldisaccharide 4'-kinase -
  QR297_RS06360 (QR297_06360) - 1365610..1365795 (+) 186 WP_011532874.1 Trm112 family protein -
  QR297_RS06365 (QR297_06365) kdsB 1365792..1366556 (+) 765 WP_015269402.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QR297_RS06370 (QR297_06370) - 1366556..1367020 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  QR297_RS06375 (QR297_06375) murB 1367017..1368036 (+) 1020 WP_189121686.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22860.11 Da        Isoelectric Point: 7.3616

>NTDB_id=844656 QR297_RS06345 WP_051099753.1 1363498..1364133(+) (exbB) [Pseudomonas shirazica strain HY376]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=844656 QR297_RS06345 WP_051099753.1 1363498..1364133(+) (exbB) [Pseudomonas shirazica strain HY376]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCGCACCTGCTGGGTCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCTGATTCGCCATTGGGCGAAATCCTTGCCGCCGGTCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCTTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGTACCCTCGGCACCATCGCCGCCATGGCTCCGCTGTTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTGTTGGCCGGTGGTATCTCCAAAGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCAGCGCCGCATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAGGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E9ZJ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825