Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QR297_RS06340 Genome accession   NZ_CP127845
Coordinates   1360866..1363079 (+) Length   737 a.a.
NCBI ID   WP_189121685.1    Uniprot ID   -
Organism   Pseudomonas shirazica strain HY376     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1355866..1368079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR297_RS06320 (QR297_06320) - 1357731..1358354 (+) 624 WP_309673514.1 glutathione S-transferase -
  QR297_RS06325 (QR297_06325) - 1358499..1359431 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  QR297_RS06330 (QR297_06330) - 1359428..1360207 (+) 780 WP_015269397.1 ABC transporter permease -
  QR297_RS06335 (QR297_06335) - 1360217..1360723 (-) 507 Protein_1234 DUF2062 domain-containing protein -
  QR297_RS06340 (QR297_06340) comA 1360866..1363079 (+) 2214 WP_189121685.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QR297_RS06345 (QR297_06345) exbB 1363498..1364133 (+) 636 WP_051099753.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QR297_RS06350 (QR297_06350) - 1364130..1364564 (+) 435 WP_013971564.1 biopolymer transporter ExbD -
  QR297_RS06355 (QR297_06355) lpxK 1364564..1365565 (+) 1002 WP_309673523.1 tetraacyldisaccharide 4'-kinase -
  QR297_RS06360 (QR297_06360) - 1365610..1365795 (+) 186 WP_011532874.1 Trm112 family protein -
  QR297_RS06365 (QR297_06365) kdsB 1365792..1366556 (+) 765 WP_015269402.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QR297_RS06370 (QR297_06370) - 1366556..1367020 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  QR297_RS06375 (QR297_06375) murB 1367017..1368036 (+) 1020 WP_189121686.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79809.86 Da        Isoelectric Point: 10.5441

>NTDB_id=844655 QR297_RS06340 WP_189121685.1 1360866..1363079(+) (comA) [Pseudomonas shirazica strain HY376]
MRTGMFALALGLLCLGFLPGLPSVGWLVLLAVAGGIGLFTRLWPLGCFLLGLCWACWSAQQALDDRLATGLDGRTLWLEG
RVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVVGGWRDTLRQRLLAVEANGRQTALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRQLGATLPLLLALIAVLLVEPL
AALLPGFWLSFAAVATLVYCFSARLGSWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDVLFRLLELVAQQQSAWLPAVLPLWAWLLVCLGTLLVLMPRGVPLRGLGGVMLLALW
VPRETVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGESDLGERVVLPTLRKLGVGRLDLMLVSHAHADHAGGAG
AIMRGLPVERVIGGELLDDLQLQPCVSGEQWMWDGVRFSMWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATEAPRIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVMHDTAEQGALRLVLGRLG
EVEGVRGQRRFWRVRVQ

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=844655 QR297_RS06340 WP_189121685.1 1360866..1363079(+) (comA) [Pseudomonas shirazica strain HY376]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGGATTGCCATCGGTCGGATGGCT
GGTGCTGCTGGCTGTAGCCGGTGGCATCGGCCTGTTTACCCGGCTGTGGCCACTGGGCTGTTTTCTGTTGGGCCTGTGTT
GGGCCTGCTGGTCTGCGCAGCAGGCGCTGGATGACCGCCTGGCAACCGGGCTGGATGGCCGCACCTTGTGGCTTGAGGGC
CGGGTGGTCGGCCTGCCGACCCGGACTGCGCAGGGTGTGCGCTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGACCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGTCGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTCGA
GGCCAATGGCCGGCAGACAGCGTTGGTGGCGCTGGTGCTTGGCGACGGGGCGGGCCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACTTGCTGGTGATCTCTGGCCAGCACATCGGCCTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGGTTGCCGTGGCTGCCCTGGGCGTGTGGCTTGGCCATGGCTGC
GGCACTGGCCTACGGTTGGTTGGCTGGTGGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGTTTTCGCCAACTGGGTGCGACCTTACCGTTGTTGCTGGCGCTGATTGCCGTACTGTTGGTGGAGCCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTGTCGTTCGCGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGCCCGCCTGGGCAG
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATTGCGATCGGCTTGCTGCCGGTACTGCTGGCTACGGGCT
TGCCGGTGAGCTTGAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCCTGGGTCAGCCTGGCCGTGCTGCCATTGGCATTG
CTGGGCACTTTGCTGCTGCCGTTGGGCGGGGTAGGGGAGGCACTGCTCTGGCTGGCGGGAGGTTTGCTCGATGTGCTCTT
CCGGCTGCTGGAGTTGGTGGCGCAACAGCAGTCGGCGTGGCTGCCAGCAGTTCTGCCGTTGTGGGCCTGGCTGCTGGTGT
GCCTGGGTACGTTGCTGGTTTTGATGCCCCGTGGCGTACCACTGCGCGGGTTGGGTGGCGTAATGCTGCTGGCGCTGTGG
GTACCCCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAGGGGCTGGCAGTGCTTTTGCG
CACCCGGCATCACAACCTGCTGTACGACGCCGGGCCGGCCAGGGGAGAGAGCGACCTGGGCGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGCTGGGGGTGGGCAGACTGGACCTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGC
GCAATCATGCGTGGCCTGCCGGTCGAACGGGTGATCGGCGGCGAATTGCTGGATGACCTGCAACTGCAACCTTGCGTAAG
TGGCGAGCAGTGGATGTGGGATGGCGTGCGCTTTTCGATGTGGCGCTGGGCCGATGGGCAGAGCAGCAATGACCGCTCCT
GTGTGTTGTTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGACATGGAGGCCGGTGCCGAACGGGCCTGGCTG
GCGGCCACGGAAGCACCGCGGATCGACTGGTTGCAGTCGCCGCATCACGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCAT
CCGCGCCACGGCGCCGCGCGGGGTACTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCGCATGCGCAGGTGGTCG
AACGTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGAGCAGGGGGCGTTGCGGTTGGTGCTGGGGAGGCTGGGG
GAGGTGGAGGGTGTGCGGGGGCAGAGGCGGTTTTGGCGGGTTCGGGTGCAGTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.444

97.693

0.581
  comA Ralstonia pseudosolanacearum GMI1000

35.422

100

0.376