Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   VZG88_RS08390 Genome accession   NZ_CP143871
Coordinates   1683224..1684570 (-) Length   448 a.a.
NCBI ID   WP_208675732.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB6     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1678224..1689570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG88_RS08360 (VZG88_08360) - 1678407..1679306 (+) 900 WP_208678646.1 alpha/beta fold hydrolase -
  VZG88_RS08365 (VZG88_08365) tsf 1679390..1680055 (-) 666 WP_208678645.1 translation elongation factor Ts -
  VZG88_RS08370 (VZG88_08370) rpsB 1680158..1680913 (-) 756 WP_208675740.1 30S ribosomal protein S2 -
  VZG88_RS08375 (VZG88_08375) - 1681295..1681579 (+) 285 WP_208678644.1 DUF4278 domain-containing protein -
  VZG88_RS08380 (VZG88_08380) - 1681675..1682361 (-) 687 WP_208675736.1 lecithin retinol acyltransferase family protein -
  VZG88_RS08385 (VZG88_08385) - 1682385..1683227 (-) 843 WP_208678643.1 alpha/beta hydrolase -
  VZG88_RS08390 (VZG88_08390) clpX 1683224..1684570 (-) 1347 WP_208675732.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  VZG88_RS08395 (VZG88_08395) clpP 1684583..1685305 (-) 723 WP_323368522.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  VZG88_RS08400 (VZG88_08400) tig 1685397..1686821 (-) 1425 WP_208678642.1 trigger factor -
  VZG88_RS08405 (VZG88_08405) - 1686812..1686976 (-) 165 WP_338437756.1 hypothetical protein -
  VZG88_RS08410 (VZG88_08410) - 1687089..1688015 (+) 927 WP_338438677.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  VZG88_RS08415 (VZG88_08415) - 1688075..1689403 (+) 1329 WP_208678641.1 PhoH family protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49683.09 Da        Isoelectric Point: 5.6571

>NTDB_id=844589 VZG88_RS08390 WP_208675732.1 1683224..1684570(-) (clpX) [Synechococcus elongatus IITB6]
MSRYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVDLCNEILDEELFDGNANPAPPPGGVKPAAAAASHQGPRKPKRSL
TLSQIPKPHDIKRYLDHHVIGQNEAKKMLSVAVYNHYKRLAYQQSAEEAGETIEIQKSNILLIGPTGCGKTLLAQTLAKL
LDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDIEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKML
EGTIANVPPQGGRKHPYQDCIQIDTRNILFICGGAFVGLEKLVDRRLGKKSIGFVHPEETKTKEQRAAAILRHMEPEDLV
QFGLIPEFIGRMPVTAVLDPLDEVALTEILTEPRDALVKQYQKLMHMDSVELEFRQDAIEAIAREAFRRKTGARALRGIV
EEIMLEVMYELPSRQDVTHCTITREMVEKRSSADVLLHPSSLPTPESA

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=844589 VZG88_RS08390 WP_208675732.1 1683224..1684570(-) (clpX) [Synechococcus elongatus IITB6]
ATGTCGAGATACGACTCTCACCTGAAGTGCTCTTTTTGCGGGAAATCCCAAGAGCAGGTACGTAAGCTCATCGCCGGACC
TGGAGTTTACATTTGTGATGAATGCGTCGACCTCTGTAACGAGATCCTCGACGAAGAATTATTTGACGGCAATGCCAATC
CTGCACCACCGCCAGGTGGCGTCAAACCCGCGGCTGCAGCTGCGAGTCATCAAGGACCTCGCAAACCGAAGCGATCGCTA
ACGCTGTCGCAAATTCCCAAACCCCACGACATCAAGCGCTATCTTGACCATCACGTCATTGGTCAAAACGAAGCCAAGAA
AATGTTGTCTGTGGCGGTTTATAACCACTACAAACGCTTGGCCTATCAGCAGTCAGCTGAAGAAGCAGGCGAAACAATTG
AAATTCAGAAATCCAATATTCTGCTGATTGGTCCAACCGGCTGTGGCAAGACTCTGCTCGCTCAGACGTTAGCCAAATTG
CTGGATGTCCCCTTCGCAGTTGCCGACGCAACAACACTGACGGAAGCCGGCTATGTCGGTGAAGACGTCGAAAACATCCT
GCTACGGCTCTTGCAAGTGGCTGATCTCGACATCGAGGAAGCTCAACGCGGCATCATCTACATCGATGAAATCGACAAGA
TTGCGCGCAAGAGCGAAAATCCTTCGATCACGCGTGACGTCTCCGGGGAAGGCGTCCAGCAGGCTTTGCTGAAGATGCTG
GAAGGCACCATCGCCAATGTGCCGCCTCAGGGAGGTCGCAAGCATCCCTATCAGGACTGCATCCAAATCGACACGCGCAA
CATCCTGTTTATCTGCGGTGGCGCCTTTGTCGGCTTGGAAAAACTCGTCGATCGCCGCTTGGGCAAAAAATCGATTGGCT
TTGTCCACCCGGAAGAGACCAAAACCAAGGAACAGCGGGCGGCTGCCATCCTGCGCCACATGGAACCCGAAGATTTGGTG
CAGTTTGGTCTGATTCCCGAATTTATCGGTCGGATGCCGGTGACGGCGGTGTTGGATCCGCTGGACGAAGTGGCGCTGAC
GGAAATCCTGACGGAACCTCGGGATGCGCTGGTCAAGCAGTATCAGAAGCTGATGCACATGGATAGCGTCGAGCTGGAAT
TCCGCCAAGATGCGATCGAAGCGATCGCCCGCGAAGCCTTCCGTCGCAAGACCGGAGCTCGGGCACTGCGCGGCATCGTT
GAAGAGATCATGCTGGAAGTGATGTACGAGCTGCCTTCTCGCCAGGACGTCACTCACTGCACGATCACGCGGGAGATGGT
TGAGAAGCGCTCCAGTGCGGATGTGCTCTTGCATCCTTCGAGTTTGCCGACACCGGAATCCGCTTGA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(341-419)

AAA domain (Cdc48 subfamily) (AAA_2)

(136-334)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.84

94.643

0.538
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.804

95.536

0.504