Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   VZG88_RS02700 Genome accession   NZ_CP143871
Coordinates   538944..541397 (-) Length   817 a.a.
NCBI ID   WP_208677669.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 533944..546397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG88_RS02675 (VZG88_02675) - 534441..535016 (-) 576 WP_208677667.1 hypothetical protein -
  VZG88_RS02680 (VZG88_02680) - 535098..535457 (+) 360 WP_228383026.1 DUF565 domain-containing protein -
  VZG88_RS02685 (VZG88_02685) - 535462..536490 (+) 1029 WP_228383027.1 hypothetical protein -
  VZG88_RS02690 (VZG88_02690) rpmF 536504..536680 (-) 177 WP_338438581.1 50S ribosomal protein L32 -
  VZG88_RS02695 (VZG88_02695) ftsH 536869..538767 (+) 1899 WP_208679165.1 ATP-dependent zinc metalloprotease FtsH -
  VZG88_RS02700 (VZG88_02700) recG 538944..541397 (-) 2454 WP_208677669.1 ATP-dependent DNA helicase RecG Machinery gene
  VZG88_RS02705 (VZG88_02705) - 541407..542351 (-) 945 WP_208677670.1 hypothetical protein -
  VZG88_RS02710 (VZG88_02710) - 542466..542777 (-) 312 WP_208672864.1 DUF3067 family protein -
  VZG88_RS02715 (VZG88_02715) - 542925..544169 (-) 1245 WP_208677671.1 tetratricopeptide repeat protein -
  VZG88_RS02720 (VZG88_02720) purD 544324..545625 (+) 1302 WP_208677672.1 phosphoribosylamine--glycine ligase -

Sequence

Protein


Download         Length: 817 a.a.        Molecular weight: 90968.04 Da        Isoelectric Point: 8.7584

>NTDB_id=844566 VZG88_RS02700 WP_208677669.1 538944..541397(-) (recG) [Synechococcus elongatus IITB6]
MTAASPAPDWRRLQQALAIEAEQGFGDLVGRQSRFSEFLSQALQDAATAIADERWQQLAQAYQRYGELSASQRQHLVANT
RRQIHEQQRCSQARVSENSPPARRLPRSQSPVATTTAQTALDQALTYLKGVGPRVAAQLERLELRTVRDLLHHYPRNYVD
YARQVNIRALEPGETATLIGAVQRCTCFTSPRNAKLTILELVVRDGSGQIRLSRFFMGTRYSGRGWQEQQRRLYPPGTMI
AASGLVKRSKYGVTLDNPEIEVLDSPDSPIASLKVGRIVPIYPLTEGVAADTLRRAIVQALPAAEQLRDPLPTALREQHQ
LLVLNQAIAAIHFPETPELLQQARRRLVFDEFLYLQLGLLQRRARQRAESAAAVLAPTGELIDRFYQLLPFQLTGAQQRV
VNDILTDLQQPWPMNRLVQGDVGSGKTVVAIVSLLAAIQAGYQGALMAPTGVLAEQHYRKLVDWCTQLHLPVELLTGSTR
AAKRREIQRSLATGELPLLVGTHALIQDPVDFQNLGLVVIDEQHRFGVAQRAKLQQKGVNPHVLTMTATPIPRTLALTLH
GDLEVSQIDELPPGRQPIQTTALGPSDRQHAHDLMRREIAQGRQVYVVLPLVEESEKLDLRSAIEEYQRLSQVFPEFQIG
LLHGRMSSAEKDAAIGAFRDRQTDILVSTTVVEVGVDVPNATVMLIEHAERFGLSQLHQLRGRVGRGGARSYCLLMSASR
SETAQQRLKVMEQSQDGFFIAEMDLRLRGPGQVLGTRQSGLPDFALASLVEDQDVLDLARTTAETLIEQDPELSRSPLLK
QELEARYRRLMGGMILT

Nucleotide


Download         Length: 2454 bp        

>NTDB_id=844566 VZG88_RS02700 WP_208677669.1 538944..541397(-) (recG) [Synechococcus elongatus IITB6]
ATGACAGCGGCTAGCCCAGCTCCTGATTGGCGTCGCCTCCAACAAGCCTTGGCGATCGAGGCAGAGCAGGGGTTTGGTGA
TCTTGTCGGGCGACAGTCCCGCTTCAGTGAATTTCTTAGTCAAGCTCTGCAAGATGCTGCAACTGCGATCGCCGATGAAC
GCTGGCAGCAATTGGCCCAAGCCTATCAGCGCTACGGCGAGCTGAGCGCCAGCCAACGCCAGCACCTCGTGGCTAACACG
CGGCGTCAAATTCATGAACAACAGCGGTGCAGCCAAGCCCGCGTTAGTGAAAACTCGCCCCCAGCCCGGCGCTTACCGCG
TAGTCAATCACCGGTGGCGACCACCACGGCTCAGACGGCATTAGACCAAGCGCTGACTTATCTCAAGGGGGTTGGACCTC
GGGTAGCGGCGCAACTGGAACGGCTGGAGTTGCGAACGGTTCGCGATCTGCTGCATCACTACCCGCGCAACTATGTTGAT
TACGCCCGCCAAGTCAACATTCGCGCCCTTGAACCCGGTGAAACTGCGACCCTGATCGGCGCGGTTCAACGCTGCACCTG
CTTCACTAGCCCGCGCAATGCCAAGCTGACAATTTTGGAGCTGGTAGTGCGCGATGGCAGCGGTCAAATCCGGCTCAGCC
GCTTCTTTATGGGGACGCGCTACAGCGGTCGCGGCTGGCAGGAACAACAGCGACGGCTCTATCCACCGGGCACGATGATC
GCTGCCTCAGGCTTGGTCAAACGCAGTAAGTACGGCGTCACCCTCGATAACCCAGAAATTGAAGTTCTCGATAGCCCCGA
CAGCCCGATCGCCTCTCTCAAAGTCGGTCGAATTGTTCCGATCTACCCGCTGACCGAAGGTGTGGCTGCCGACACCCTCC
GCCGGGCGATCGTCCAAGCTCTACCAGCGGCAGAGCAACTGCGCGATCCGTTGCCCACAGCGCTGCGCGAACAACATCAG
TTGCTGGTGCTCAATCAAGCGATCGCGGCCATTCACTTCCCAGAGACTCCAGAACTCCTGCAGCAGGCCCGCCGGCGACT
GGTCTTCGACGAGTTTCTCTACCTTCAGCTGGGTCTGTTGCAGCGACGAGCCCGACAACGAGCAGAGTCAGCAGCAGCGG
TTTTAGCCCCAACCGGTGAGTTGATCGATCGTTTTTATCAATTGCTGCCCTTCCAACTGACAGGTGCCCAGCAGCGGGTG
GTCAACGATATCCTGACTGACCTACAGCAACCTTGGCCGATGAATCGATTGGTGCAAGGCGATGTTGGTTCTGGCAAAAC
GGTGGTCGCGATCGTCAGTCTCTTAGCCGCGATTCAAGCAGGCTATCAAGGTGCCCTGATGGCTCCAACGGGAGTGTTGG
CCGAACAGCACTATCGCAAGCTAGTAGACTGGTGTACCCAACTGCATCTGCCCGTGGAGTTACTGACCGGTTCCACTCGT
GCAGCGAAACGGCGGGAAATTCAGCGATCGCTGGCAACGGGGGAACTGCCCCTGCTAGTCGGTACCCATGCATTGATTCA
GGATCCAGTTGATTTTCAAAATCTCGGTTTGGTGGTGATTGATGAGCAGCATCGCTTTGGCGTGGCGCAGCGAGCCAAAC
TACAGCAAAAAGGCGTGAATCCCCATGTGCTGACCATGACGGCGACGCCAATTCCGCGGACCTTGGCGCTGACTCTGCAT
GGTGATTTAGAAGTCAGTCAAATCGATGAATTACCACCGGGTCGGCAACCGATTCAAACCACAGCCCTAGGCCCTAGCGA
TCGCCAACATGCCCATGATTTGATGCGACGCGAAATTGCTCAAGGGCGTCAAGTTTATGTTGTCCTGCCGCTGGTTGAGG
AGTCAGAAAAACTCGACCTGCGATCGGCGATCGAAGAATATCAGCGTCTTTCTCAAGTCTTTCCCGAGTTTCAGATCGGC
TTGCTGCACGGACGAATGAGTTCTGCCGAAAAAGACGCCGCGATCGGCGCTTTTCGCGATCGTCAGACCGACATTCTGGT
GTCGACAACAGTTGTTGAAGTTGGTGTCGATGTCCCGAATGCGACGGTCATGCTGATTGAACATGCCGAGCGATTTGGCT
TGTCGCAGTTACACCAATTACGGGGTCGAGTCGGTCGCGGCGGGGCGCGTTCCTATTGCCTCTTGATGAGTGCCTCGCGC
AGTGAAACTGCTCAACAGCGCCTCAAGGTGATGGAACAGTCGCAGGATGGCTTCTTCATTGCCGAAATGGATTTGCGATT
GCGCGGCCCTGGGCAAGTGCTCGGCACACGTCAATCGGGCTTACCTGATTTTGCCCTTGCCAGTTTGGTTGAAGACCAAG
ATGTTCTCGACTTAGCCCGCACAACCGCCGAAACATTAATTGAGCAAGATCCAGAGCTGTCGCGATCGCCTTTGCTCAAA
CAAGAACTCGAAGCTCGTTATCGACGGCTGATGGGTGGCATGATTTTGACTTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(598-708)

RecG wedge domain (RecG_wedge)

(126-301)

DEAD/DEAH box helicase (DEAD)

(396-551)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(735-796)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

42.816

85.19

0.365
  recG Neisseria meningitidis strain C311

44.196

82.252

0.364