Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   NSY31_RS17710 Genome accession   NZ_CP127834
Coordinates   3582037..3583182 (+) Length   381 a.a.
NCBI ID   WP_098081853.1    Uniprot ID   -
Organism   Bacillus velezensis strain Ag109     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3577037..3588182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSY31_RS17690 (NSY31_17690) - 3577934..3578362 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  NSY31_RS17695 (NSY31_17695) - 3578516..3579028 (+) 513 Protein_3435 bacteriocin biosynthesis protein AlbG -
  NSY31_RS17700 (NSY31_17700) - 3579035..3580411 (-) 1377 WP_098081851.1 YncE family protein -
  NSY31_RS17705 (NSY31_17705) - 3580451..3581806 (-) 1356 WP_098081852.1 YncE family protein -
  NSY31_RS17710 (NSY31_17710) rapF 3582037..3583182 (+) 1146 WP_098081853.1 tetratricopeptide repeat protein Regulator
  NSY31_RS17715 (NSY31_17715) phrF 3583166..3583285 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  NSY31_RS17720 (NSY31_17720) - 3583483..3583686 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  NSY31_RS17725 (NSY31_17725) - 3583700..3583903 (+) 204 WP_007407641.1 hypothetical protein -
  NSY31_RS17730 (NSY31_17730) - 3583938..3584123 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  NSY31_RS17735 (NSY31_17735) - 3584309..3584590 (+) 282 WP_007407643.1 hypothetical protein -
  NSY31_RS17740 (NSY31_17740) - 3584634..3585146 (+) 513 WP_080130555.1 stage II sporulation protein M -
  NSY31_RS17745 (NSY31_17745) - 3585737..3585955 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  NSY31_RS17750 (NSY31_17750) speB 3586124..3586996 (-) 873 WP_007407646.1 agmatinase -
  NSY31_RS17755 (NSY31_17755) speE 3587055..3587885 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45544.51 Da        Isoelectric Point: 4.5155

>NTDB_id=844561 NSY31_RS17710 WP_098081853.1 3582037..3583182(+) (rapF) [Bacillus velezensis strain Ag109]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYEIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=844561 NSY31_RS17710 WP_098081853.1 3582037..3583182(+) (rapF) [Bacillus velezensis strain Ag109]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACATATTTTTCT
ATGGATTATGCCCGGCAGGCTTATGAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTGGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(190-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.74

100

0.787
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567