Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VZG88_RS01740 Genome accession   NZ_CP143871
Coordinates   334874..335245 (+) Length   123 a.a.
NCBI ID   WP_208677541.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329874..340245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG88_RS01725 (VZG88_01725) - 330074..331876 (-) 1803 WP_208677538.1 ABC transporter ATP-binding protein -
  VZG88_RS01730 (VZG88_01730) aspS 332057..333856 (+) 1800 WP_208677539.1 aspartate--tRNA ligase -
  VZG88_RS01735 (VZG88_01735) truB 333900..334784 (-) 885 WP_208677540.1 tRNA pseudouridine(55) synthase TruB -
  VZG88_RS01740 (VZG88_01740) pilH 334874..335245 (+) 372 WP_208677541.1 response regulator Machinery gene
  VZG88_RS01745 (VZG88_01745) rpmA 335373..335639 (-) 267 WP_208673138.1 50S ribosomal protein L27 -
  VZG88_RS01750 (VZG88_01750) rplU 335674..336057 (-) 384 WP_208673136.1 50S ribosomal protein L21 -
  VZG88_RS01755 (VZG88_01755) - 336294..337148 (+) 855 WP_208673134.1 circadian clock protein KaiA -
  VZG88_RS01760 (VZG88_01760) kaiB 337238..337546 (+) 309 WP_208677542.1 circadian clock protein KaiB -
  VZG88_RS01765 (VZG88_01765) kaiC 337598..339157 (+) 1560 WP_208677543.1 circadian clock protein KaiC -
  VZG88_RS01770 (VZG88_01770) - 339154..340161 (-) 1008 WP_228382996.1 acyl-CoA dehydrogenase family protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13495.44 Da        Isoelectric Point: 4.4829

>NTDB_id=844562 VZG88_RS01740 WP_208677541.1 334874..335245(+) (pilH) [Synechococcus elongatus IITB6]
MANILVVDDSSLYLELARQALAEHGHHVTLANNGQEALQTIAQQKPDLILLDIVMPEMNGYDVLRSLKKSPDTASIPVIL
CSTKGEDFDKYWGLKQGATAYLTKPYEVNDLLVLVQEQISAAG

Nucleotide


Download         Length: 372 bp        

>NTDB_id=844562 VZG88_RS01740 WP_208677541.1 334874..335245(+) (pilH) [Synechococcus elongatus IITB6]
ATGGCCAATATCCTCGTTGTTGACGACAGCAGTCTCTATTTAGAACTGGCGCGTCAAGCGCTAGCTGAACATGGCCATCA
CGTGACTCTTGCCAACAATGGTCAGGAAGCTTTACAAACCATTGCCCAGCAAAAGCCAGACCTGATCTTGCTCGACATTG
TGATGCCGGAAATGAATGGCTACGATGTCTTGCGGTCACTCAAGAAATCGCCGGACACAGCCAGCATTCCCGTCATCCTT
TGTTCCACTAAGGGCGAAGACTTCGATAAGTATTGGGGCCTAAAGCAGGGCGCGACTGCTTACTTAACCAAGCCCTATGA
GGTCAACGATCTGCTGGTTTTGGTACAGGAACAAATTAGCGCTGCAGGTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

47.009

95.122

0.447