NTDB

Overview

Name	clpC	Type	Regulator
Locus tag	VZH39_RS12425	Genome accession	NZ_CP143862
Coordinates	2495170..2497857 (-)	Length	895 a.a.
NCBI ID	WP_338430098.1	Uniprot ID	-
Organism	Synechococcus elongatus IITB8
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2490170..2502857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZH39_RS12390 (VZH39_12390)	-	2490355..2491491 (+)	1137	WP_208674450.1	DUF3747 domain-containing protein	-
VZH39_RS12395 (VZH39_12395)	rplL	2491773..2492159 (-)	387	WP_338430097.1	50S ribosomal protein L7/L12	-
VZH39_RS12400 (VZH39_12400)	rplJ	2492220..2492747 (-)	528	WP_208674449.1	50S ribosomal protein L10	-
VZH39_RS12405 (VZH39_12405)	rplA	2492976..2493689 (-)	714	WP_208674448.1	50S ribosomal protein L1	-
VZH39_RS12410 (VZH39_12410)	rplK	2493761..2494186 (-)	426	WP_011377656.1	50S ribosomal protein L11	-
VZH39_RS12415 (VZH39_12415)	nusG	2494194..2494787 (-)	594	WP_222610299.1	transcription termination/antitermination protein NusG	-
VZH39_RS12420 (VZH39_12420)	secE	2494820..2495065 (-)	246	WP_011243201.1	preprotein translocase subunit SecE	-
VZH39_RS12425 (VZH39_12425)	clpC	2495170..2497857 (-)	2688	WP_338430098.1	ATP-dependent chaperone ClpB	Regulator
VZH39_RS12430 (VZH39_12430)	gloA	2497945..2498358 (-)	414	WP_338430099.1	lactoylglutathione lyase	-
VZH39_RS12435 (VZH39_12435)	eno	2498568..2499860 (+)	1293	WP_338430100.1	phosphopyruvate hydratase	-
VZH39_RS12440 (VZH39_12440)	-	2500104..2501870 (+)	1767	WP_338430101.1	ABC transporter ATP-binding protein	-

Sequence

Protein

Download Length: 895 a.a. Molecular weight: 100023.33 Da Isoelectric Point: 4.6779

                                >NTDB_id=844556 VZH39_RS12425 WP_338430098.1 2495170..2497857(-) (clpC) [Synechococcus elongatus IITB8]

MQPTDPNRFTDQAWDAIVESQTVARQLRQQQLEVEHVLLALLDQESGVAAEILAKAGVAVANLRQPLEDFARRQPRNATG

TQLYLGRGLDRLLDLAERARELWQDEFIGVEHLLMGFVEDDRIGRRLCQGFKLDAKTLETTIQELRSPAADEAEAEESEP

SYPFLSKYGRDLTALAEQEKLDPVIGRDLEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEGLAQRIVAGEVPDSLKQRR

LISLDMGSLIAGAKYRGEFEERLRAVLHEVTHSDGQMVLFIDELHTVVGAGAGQQGSAMDAGNLLKPMLARGELRCIGAT

TTDEYRRTIEKDPALERRFQQVYVSQPSVEDTIAILRGLKERYEGHHGVKITDGALMAAAKLSHRYISDRFLPDKAIDLI

DEASAQLKMEITSKPSELEDLERRLLQLEMEQLSLSGENGQATVHSDRLQQIQTELQTLQEQQARLNQQWQQEKQLLEEL

GHLQEEEETLRQQVNQAEREHDLNKGAELKFGQLEALQHQRQAIEEQIQALHANGQTLLREQVEEADIAEIVARWTNIPV

QRLLESERQKLLQLESFLHQRVIGQDEAVVAVAAAIRRARAGMKDPSRPIGSFLFLGPTGVGKTELARALANCLFDAEDA

LIRFDMSEYMEKNSISRLIGAPPGYIGYEEGGQLSEAIRRHPYAVVLFDEVEKAHPDVFNLLLQVLDDGRITDSQGRTID

FCNAVIVMTSNIGSQFILEMGEEDTSLEAVELRVLGALRQHFRPEFLNRIDDTILFQPLSRSQLQQIVDIQLQRLKRLLA

EQAIALTVTPAAAANLADRGYDPVYGARPLKRAIQRLVENPVASLILEQQFEAGNSLIVDVDAAGQLQFQVSKPVAATVV

EPDDSPAIEVEAIPS

Nucleotide

Download Length: 2688 bp

                                >NTDB_id=844556 VZH39_RS12425 WP_338430098.1 2495170..2497857(-) (clpC) [Synechococcus elongatus IITB8]

ATGCAGCCCACCGACCCCAATCGTTTTACAGACCAAGCCTGGGATGCGATCGTCGAATCGCAAACTGTGGCTCGCCAACT

GCGGCAGCAGCAGTTGGAGGTTGAGCACGTCCTGCTGGCCTTGCTTGATCAGGAGTCGGGGGTTGCAGCGGAAATTTTGG

CGAAGGCAGGGGTAGCCGTTGCGAATCTGCGGCAGCCGCTTGAGGATTTTGCGCGGCGACAACCTCGTAATGCCACAGGG

ACTCAGCTCTACCTCGGGCGCGGCCTCGATCGCCTGCTGGATTTAGCGGAACGGGCACGAGAACTCTGGCAAGACGAGTT

CATCGGCGTTGAACATTTGCTGATGGGCTTTGTCGAGGACGATCGGATTGGCCGCCGCCTCTGCCAAGGCTTCAAGCTCG

ATGCCAAAACGCTGGAGACAACCATTCAAGAGCTGCGATCGCCCGCTGCCGATGAGGCCGAAGCGGAAGAAAGCGAGCCC

AGCTATCCTTTCCTCAGCAAGTATGGTCGTGATCTGACGGCGCTGGCCGAGCAAGAAAAACTCGATCCGGTGATCGGCCG

CGATCTAGAAATTCGTCGCGTCATTCAAGTGCTGTCGCGGCGCAGCAAGAACAATCCCGTGCTGATCGGTGAACCGGGAG

TGGGTAAAACTGCGATCGCGGAAGGCTTAGCCCAGCGGATTGTCGCCGGTGAAGTACCGGATTCGCTCAAGCAACGGCGG

CTGATCAGCCTCGACATGGGCTCGCTGATTGCTGGCGCGAAATATCGCGGTGAATTCGAGGAGCGGTTGCGGGCAGTTCT

GCACGAAGTCACCCACTCCGATGGCCAGATGGTGCTGTTCATCGACGAGTTGCACACCGTCGTCGGAGCTGGCGCGGGTC

AGCAAGGCAGCGCCATGGATGCGGGCAACCTGCTCAAGCCGATGCTGGCACGGGGTGAACTGCGCTGTATCGGGGCCACA

ACGACCGACGAGTATCGCCGCACGATCGAGAAGGATCCGGCCCTAGAACGCCGCTTCCAACAGGTCTACGTCAGCCAGCC

CAGCGTCGAAGACACGATCGCGATTCTGCGTGGTCTCAAAGAACGGTACGAAGGCCACCACGGGGTCAAGATTACCGACG

GTGCTCTGATGGCCGCAGCCAAACTCTCGCATCGCTACATCAGCGATCGCTTCTTGCCGGACAAGGCGATCGACCTAATC

GACGAAGCTTCGGCCCAACTGAAGATGGAGATCACCTCTAAGCCCAGTGAGTTGGAGGATTTGGAACGACGGCTCCTGCA

ACTGGAAATGGAGCAGCTTTCCCTCAGCGGAGAGAACGGGCAGGCAACAGTTCACAGCGATCGCCTTCAGCAAATCCAAA

CAGAACTACAGACACTCCAGGAACAACAAGCCCGACTCAATCAGCAGTGGCAGCAGGAAAAACAACTGCTAGAAGAACTG

GGCCATCTGCAGGAGGAAGAAGAAACTCTGCGTCAGCAGGTCAATCAGGCCGAGCGCGAACATGACCTCAACAAAGGCGC

TGAGCTGAAATTTGGGCAACTGGAAGCCCTGCAACATCAGCGGCAGGCGATCGAGGAACAGATTCAAGCCCTGCACGCCA

ATGGTCAAACCTTGCTGCGCGAGCAAGTGGAAGAGGCTGATATTGCCGAAATTGTGGCGCGCTGGACCAACATTCCCGTG

CAGCGCCTGCTGGAATCGGAACGCCAGAAGCTACTCCAGCTCGAAAGCTTCTTGCACCAACGGGTGATTGGCCAAGATGA

AGCGGTCGTCGCTGTCGCTGCCGCGATTCGCCGTGCCCGCGCTGGCATGAAAGATCCCAGCCGCCCGATCGGTTCTTTCC

TCTTCCTCGGGCCAACGGGCGTCGGTAAAACCGAACTGGCTCGCGCCCTCGCCAACTGTCTGTTTGATGCGGAAGATGCA

CTGATCCGCTTCGACATGTCGGAGTACATGGAGAAGAATTCCATCTCGCGGCTAATTGGTGCGCCCCCCGGCTACATCGG

CTACGAAGAGGGCGGTCAGCTCTCAGAAGCCATCCGCCGCCATCCCTACGCGGTAGTGCTGTTCGATGAAGTCGAGAAGG

CGCACCCCGATGTCTTCAACCTGTTGCTGCAGGTTCTGGATGATGGCCGGATTACCGACTCACAAGGCCGCACCATCGAC

TTCTGCAACGCCGTGATTGTGATGACTAGCAACATCGGCAGCCAGTTCATTCTGGAAATGGGCGAAGAAGACACCAGCCT

CGAAGCTGTGGAGCTGAGAGTACTAGGGGCGCTAAGGCAGCACTTCCGTCCGGAATTTCTCAACCGAATTGACGACACAA

TCCTGTTCCAGCCACTCTCGCGCAGCCAGCTCCAGCAAATTGTTGACATCCAGTTACAGCGACTGAAACGGCTACTGGCA

GAACAGGCGATCGCCCTCACGGTTACACCAGCAGCGGCGGCCAATCTCGCCGATCGTGGCTACGACCCGGTCTACGGGGC

ACGCCCACTCAAACGAGCAATCCAGCGTTTGGTCGAAAATCCGGTGGCTTCGTTGATTCTCGAGCAGCAGTTTGAAGCCG

GCAACTCGCTAATTGTCGATGTGGATGCCGCAGGACAGTTGCAATTTCAAGTCAGTAAACCTGTTGCAGCGACTGTCGTT

GAGCCGGATGATAGCCCCGCGATCGAAGTTGAAGCCATTCCCTCCTAG