Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSY31_RS16760 Genome accession   NZ_CP127834
Coordinates   3394835..3395524 (-) Length   229 a.a.
NCBI ID   WP_286047703.1    Uniprot ID   -
Organism   Bacillus velezensis strain Ag109     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3389835..3400524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSY31_RS16725 (NSY31_16725) - 3390032..3390514 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NSY31_RS16730 (NSY31_16730) flgM 3390529..3390795 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSY31_RS16735 (NSY31_16735) - 3390865..3391284 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  NSY31_RS16740 (NSY31_16740) comFC 3391358..3392047 (-) 690 WP_198404715.1 phosphoribosyltransferase family protein Machinery gene
  NSY31_RS16745 (NSY31_16745) - 3392053..3392337 (-) 285 WP_098081807.1 late competence development ComFB family protein -
  NSY31_RS16750 (NSY31_16750) comFA 3392395..3393780 (-) 1386 WP_098081808.1 DEAD/DEAH box helicase Machinery gene
  NSY31_RS16755 (NSY31_16755) - 3393889..3394737 (-) 849 WP_063094272.1 DegV family protein -
  NSY31_RS16760 (NSY31_16760) degU 3394835..3395524 (-) 690 WP_286047703.1 two-component system response regulator DegU Regulator
  NSY31_RS16765 (NSY31_16765) degS 3395601..3396764 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NSY31_RS16770 (NSY31_16770) - 3396987..3397634 (+) 648 WP_007614107.1 YigZ family protein -
  NSY31_RS16775 (NSY31_16775) - 3397639..3398859 (+) 1221 WP_012118574.1 LCP family protein -
  NSY31_RS16780 (NSY31_16780) - 3398958..3400034 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25813.52 Da        Isoelectric Point: 5.7457

>NTDB_id=844556 NSY31_RS16760 WP_286047703.1 3394835..3395524(-) (degU) [Bacillus velezensis strain Ag109]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRCLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=844556 NSY31_RS16760 WP_286047703.1 3394835..3395524(-) (degU) [Bacillus velezensis strain Ag109]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCTGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996