Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   VZH39_RS12290 Genome accession   NZ_CP143862
Coordinates   2467744..2470134 (+) Length   796 a.a.
NCBI ID   WP_338430077.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2462744..2475134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH39_RS12270 (VZH39_12270) - 2463311..2463625 (+) 315 WP_208674498.1 hypothetical protein -
  VZH39_RS12275 (VZH39_12275) - 2463674..2464216 (+) 543 WP_338430075.1 cupin -
  VZH39_RS12280 (VZH39_12280) - 2464300..2465790 (+) 1491 WP_208678091.1 NADH-quinone oxidoreductase subunit M -
  VZH39_RS12285 (VZH39_12285) - 2465924..2467705 (+) 1782 WP_338430076.1 mechanosensitive ion channel family protein -
  VZH39_RS12290 (VZH39_12290) mutS/mutS2 2467744..2470134 (+) 2391 WP_338430077.1 endonuclease MutS2 Machinery gene
  VZH39_RS12295 (VZH39_12295) - 2470138..2471298 (-) 1161 WP_338430078.1 citrate synthase -
  VZH39_RS12300 (VZH39_12300) sixA 2471434..2471922 (-) 489 WP_338430079.1 phosphohistidine phosphatase SixA -
  VZH39_RS12305 (VZH39_12305) - 2471926..2473605 (-) 1680 WP_338430080.1 DUF3352 domain-containing protein -
  VZH39_RS12310 (VZH39_12310) - 2473770..2474114 (+) 345 WP_338430081.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 87485.76 Da        Isoelectric Point: 6.8353

>NTDB_id=844555 VZH39_RS12290 WP_338430077.1 2467744..2470134(+) (mutS/mutS2) [Synechococcus elongatus IITB8]
MAPLLPVEQEALDLLEWPLLCSQVASFAATALARRAARSLPLASSQAESEYLLAQTAEAQALELTLPQGLPFAGVFDIGE
ALARVERQAVLSGEELLQIASTLAAMRQLRRLIDAAEATPTLQAIVADLRTYPELEQQIHFCIEDSGEVADRASDALLGI
RQQQRQVRSQILDRLNRLLRNQSNLFQELVISRRSDRYVLPVKAGQKEAVPGIVHDSSSSGSTLYIEPRSVIELNNQLRQ
LQRREEVESEAVRRRLSEAIAAVSADLETLLAIATALDLAVARARYGLHLEANRPRFTRRDEPICLRQLRHPLLLWQQRQ
EPERSVVPVNFQLQSSLKVVAITGPNTGGKTVTLKSLGLAGLMARAGLFVPAREPVELPWFERILTDIGDEQSLQQSLST
FSGHIRRIGRILEALPTAGASLVLLDEVGAGTDPSEGSALAIALLRYLADHATLTIATTHYGELKALKYQDDRFENASVE
FDDRSLSPTYRLLWGIPGRSNALIIAERLGLSPAVVAEARSQLEGGRDRDVDAVIAGLEAQRRDQEEKAAAAAQLLRQTE
KLHAELQAKTAELREREQSLRQQQEVAIQSEIEQARQRVAKVVRRLQQGPKSTKAERARQASETLKSLSQPTVTVVAPPP
GFQPQLGDRLRIPRLGKVGEVLAIAPDRQELTVRCGILKLTVNYGDVESLQGEKVELPPPPPKSITPPPPPKDAPAIRTE
RNTFDVRGSRVSEAEVVLEDALRQAIGPIWIIHGHGTGKLRHGVHQFLREHPLVAKFEAADQADGGNGVTVAYPKT

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=844555 VZH39_RS12290 WP_338430077.1 2467744..2470134(+) (mutS/mutS2) [Synechococcus elongatus IITB8]
GTGGCTCCTTTGCTCCCCGTTGAACAGGAAGCGCTCGACCTCCTTGAATGGCCGCTGCTCTGCAGCCAAGTCGCCAGTTT
TGCGGCGACAGCATTGGCACGGCGGGCAGCGCGATCGCTGCCGTTGGCCAGCAGCCAAGCGGAGAGTGAATACCTGTTAG
CCCAGACTGCGGAAGCCCAAGCGTTGGAGTTGACGCTGCCCCAAGGTCTGCCTTTTGCTGGGGTGTTTGATATTGGCGAA
GCCCTCGCCCGCGTGGAGCGACAGGCAGTGCTCAGCGGAGAGGAGCTGCTGCAAATCGCCTCCACCCTCGCTGCAATGCG
GCAATTGCGCCGCCTGATCGATGCGGCAGAAGCAACCCCCACCCTGCAGGCGATCGTTGCTGATCTGCGCACCTATCCGG
AGCTAGAGCAGCAGATTCATTTCTGCATTGAAGATTCGGGAGAAGTTGCCGATCGCGCCAGTGATGCGCTGCTGGGGATT
CGCCAACAGCAACGCCAAGTCCGTAGTCAAATTCTCGATCGCCTGAATCGTCTGCTGCGCAACCAGTCCAATCTCTTTCA
GGAGCTGGTGATCAGCCGCCGCAGCGATCGCTACGTGCTGCCGGTCAAAGCGGGGCAGAAAGAGGCGGTGCCCGGCATTG
TTCACGACAGCTCCAGCAGCGGTTCAACACTCTACATTGAGCCGCGCAGTGTCATTGAACTGAATAACCAACTGCGTCAA
CTGCAGCGCCGAGAGGAAGTCGAGTCGGAGGCGGTGCGGCGGCGTCTGAGTGAAGCGATCGCGGCGGTCAGTGCTGATTT
AGAGACCCTTTTGGCGATCGCGACAGCCTTGGATTTGGCAGTGGCACGGGCGCGCTACGGCCTGCATTTAGAAGCAAATC
GACCGCGTTTTACTCGCCGTGACGAGCCGATTTGTCTGCGGCAACTGCGCCATCCCTTGCTGCTCTGGCAACAGCGCCAA
GAGCCCGAACGTTCGGTGGTGCCCGTCAATTTCCAGTTGCAATCGTCGCTCAAAGTGGTGGCGATCACGGGTCCAAATAC
CGGCGGTAAAACGGTGACGCTGAAGAGCTTGGGCTTGGCGGGCTTGATGGCGCGGGCAGGCTTGTTTGTCCCTGCTCGTG
AGCCAGTAGAGTTGCCCTGGTTTGAGCGCATCCTCACCGATATTGGCGATGAGCAGTCGCTCCAGCAAAGCCTTTCGACC
TTTTCAGGCCATATCCGGCGGATTGGCCGAATTCTGGAGGCGCTGCCGACGGCAGGGGCCAGTTTAGTCCTGCTGGATGA
AGTTGGGGCAGGCACTGATCCTTCCGAGGGCAGTGCGCTGGCGATCGCGCTGCTGCGCTACTTGGCTGATCACGCCACCC
TGACGATCGCCACGACGCACTACGGCGAACTGAAAGCACTGAAGTATCAGGACGATCGCTTCGAAAATGCCTCGGTCGAA
TTTGACGATCGCAGTCTTTCCCCCACCTATCGCTTGCTCTGGGGCATCCCCGGGCGATCGAATGCGCTGATCATTGCCGA
GCGCCTGGGACTATCACCAGCAGTTGTAGCTGAGGCACGATCGCAACTGGAAGGTGGCCGCGATCGCGATGTTGATGCGG
TAATTGCGGGGCTGGAAGCACAACGGCGCGATCAAGAGGAGAAGGCCGCCGCCGCCGCCCAGTTGTTGCGGCAGACCGAA
AAGTTACATGCGGAGCTGCAAGCCAAAACTGCAGAATTGCGGGAGCGAGAGCAGAGTCTGCGCCAGCAGCAAGAAGTGGC
GATCCAGTCGGAAATCGAGCAGGCGCGGCAGCGGGTTGCTAAGGTGGTGCGCCGCCTCCAACAAGGCCCGAAATCAACGA
AAGCTGAGCGGGCACGGCAGGCCAGTGAAACATTGAAGTCGCTGTCGCAACCGACGGTAACGGTCGTTGCACCGCCGCCC
GGTTTTCAGCCACAGTTGGGCGATCGCCTGCGGATTCCGCGGCTCGGTAAAGTCGGAGAAGTTTTGGCGATCGCGCCGGA
TCGACAGGAATTGACCGTGCGTTGCGGCATTCTCAAGCTGACAGTTAATTACGGCGATGTGGAATCACTCCAGGGCGAAA
AGGTGGAGCTGCCCCCGCCGCCGCCCAAGTCCATAACTCCGCCACCACCACCCAAGGATGCGCCAGCGATTCGCACGGAA
CGCAATACCTTCGATGTGCGGGGCAGCCGTGTCTCGGAAGCCGAAGTGGTGCTAGAAGATGCACTGCGGCAGGCGATCGG
GCCGATCTGGATCATCCATGGCCATGGCACGGGCAAATTACGCCACGGTGTTCACCAGTTTTTGCGCGAGCATCCCCTCG
TCGCAAAGTTTGAAGCGGCAGACCAAGCCGACGGAGGCAACGGCGTCACCGTCGCCTACCCCAAGACCTAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(647-686)

MutS domain V (MutS_V)

(342-523)

Smr domain (Smr)

(725-792)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

36.646

100

0.371