Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VZH39_RS10310 Genome accession   NZ_CP143862
Coordinates   2077322..2077684 (+) Length   120 a.a.
NCBI ID   WP_208675098.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2072322..2082684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH39_RS10285 (VZH39_10285) - 2072341..2073093 (-) 753 WP_208675105.1 cbb3-type cytochrome c oxidase subunit II -
  VZH39_RS10290 (VZH39_10290) - 2073090..2074541 (-) 1452 WP_338429772.1 cbb3-type cytochrome c oxidase subunit I -
  VZH39_RS10295 (VZH39_10295) mreD 2074674..2075357 (-) 684 WP_228383154.1 rod shape-determining protein MreD -
  VZH39_RS10300 (VZH39_10300) mreC 2075318..2076067 (-) 750 WP_208678351.1 rod shape-determining protein MreC -
  VZH39_RS10305 (VZH39_10305) - 2076092..2077093 (-) 1002 WP_275937699.1 rod shape-determining protein -
  VZH39_RS10310 (VZH39_10310) ssb 2077322..2077684 (+) 363 WP_208675098.1 single-stranded DNA-binding protein Machinery gene
  VZH39_RS10315 (VZH39_10315) - 2077811..2078242 (+) 432 WP_338429773.1 GNAT family N-acetyltransferase -
  VZH39_RS10320 (VZH39_10320) comA 2078282..2079721 (-) 1440 WP_338429774.1 phospholipase D-like domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13530.20 Da        Isoelectric Point: 7.9752

>NTDB_id=844545 VZH39_RS10310 WP_208675098.1 2077322..2077684(+) (ssb) [Synechococcus elongatus IITB8]
MSLNVVNLVGRVGRDPEARYFESGSVVCKFSLAVNRRTRNDEPDWFNVEFWGREAQVAIDYVKKGSLIGISGALKIESWT
DRDGKQRTTPVVRGNRLELLGSRRDQEGGMAPRDPDSDLF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=844545 VZH39_RS10310 WP_208675098.1 2077322..2077684(+) (ssb) [Synechococcus elongatus IITB8]
ATGAGCTTAAATGTTGTCAACTTGGTGGGGCGCGTGGGCCGCGACCCTGAGGCTCGCTACTTCGAGTCCGGCTCAGTAGT
CTGTAAGTTTTCGCTGGCGGTCAATCGCCGCACCCGGAATGATGAACCCGACTGGTTCAACGTGGAGTTTTGGGGGCGCG
AGGCACAAGTCGCGATCGACTATGTCAAAAAAGGCAGCCTGATCGGGATCAGTGGCGCCCTCAAAATCGAAAGCTGGACC
GATCGCGATGGCAAGCAGCGAACCACTCCTGTGGTGAGGGGCAATCGTCTCGAACTGCTCGGCTCGCGCCGCGATCAGGA
AGGTGGGATGGCACCTCGAGATCCCGATAGCGATTTGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

37.5

100

0.375