Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   VZH39_RS01600 Genome accession   NZ_CP143862
Coordinates   333782..336235 (+) Length   817 a.a.
NCBI ID   WP_338430629.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 328782..341235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH39_RS01580 (VZH39_01580) purD 329539..330840 (-) 1302 WP_338430624.1 phosphoribosylamine--glycine ligase -
  VZH39_RS01585 (VZH39_01585) - 330995..332239 (+) 1245 WP_338430625.1 hypothetical protein -
  VZH39_RS01590 (VZH39_01590) - 332411..332722 (+) 312 WP_208672864.1 DUF3067 family protein -
  VZH39_RS01595 (VZH39_01595) - 332837..333772 (+) 936 WP_338430627.1 hypothetical protein -
  VZH39_RS01600 (VZH39_01600) recG 333782..336235 (+) 2454 WP_338430629.1 ATP-dependent DNA helicase RecG Machinery gene
  VZH39_RS01605 (VZH39_01605) ftsH 336412..338310 (-) 1899 WP_338431795.1 ATP-dependent zinc metalloprotease FtsH -
  VZH39_RS01610 (VZH39_01610) rpmF 338499..338675 (+) 177 WP_208672867.1 50S ribosomal protein L32 -
  VZH39_RS01615 (VZH39_01615) - 338689..339759 (-) 1071 WP_338438850.1 hypothetical protein -
  VZH39_RS01620 (VZH39_01620) - 339722..340081 (-) 360 WP_261789778.1 DUF565 domain-containing protein -
  VZH39_RS01625 (VZH39_01625) - 340163..340738 (+) 576 WP_208677667.1 hypothetical protein -

Sequence

Protein


Download         Length: 817 a.a.        Molecular weight: 91147.24 Da        Isoelectric Point: 8.8966

>NTDB_id=844512 VZH39_RS01600 WP_338430629.1 333782..336235(+) (recG) [Synechococcus elongatus IITB8]
MTPATPAPDWRRLQQALAIEAEQGFGDLVGRQSRFSEFLSQALQDAATAIADERWQQLAQAYQRYGELSASQRQHLVANT
RRQIHEQQRRSQARVSENSPPARRLPRSQSPVATTTAQTALEQALTYLKGVGPRVAAQLERLELRTVRDLLHHYPRNYVD
YARQVNIRALEPGETATLIGAVQRCTCFTSPRNAKLTILELVVRDGSGQIRLSRFFMGTRYSGRGWQEQQRRLYPPGTMI
AASGLVKRSKYGVTLDNPEIEVLDSPDSPIASLKVGRIVPIYPLTEGVAADTLRRAIVQALPAAEQLRDPLPTALREQHQ
LLVLNQAIAAIHFPETPELLQQARRRLVFDEFLYLQLGLLQRRARQRAESAAAVLAPTGELIDRFYQLLPFQLTGAQQRV
VNDILTDLQQPWPMNRLVQGDVGSGKTVVAIVSLLAAIQAGYQGALMAPTEVLAEQHYRKLVDWCTQLHLPVELLTGSTR
AAKRREIQRSLATGELPLLVGTHALIQDPVDFQNLGLVVIDEQHRFGVAQRAKLQQKGVNPHVLTMTATPIPRTLALTLH
GDLEVSQIDELPPGRQPIQTTALGPSDRQHAHDLMRREIAQGRQVYVVLPLVEESEKLDLRSAIEEYQRLSQVFPEFQIG
LLHGRMSSAEKDAAIGAFRDRQTDILVSTTVVEVGVDVPNATVMLIEHAERFGLSQLHQLRGRVGRGGARSYCLLMSASR
SETAQQRLKVMEQSQDGFFIAEMDLRLRGPGQVLGTRQSGLPDFALASLVEDQDVLDLARTTAETLIEQDPELSRSPLLK
QELEARYRRLMGGMILT

Nucleotide


Download         Length: 2454 bp        

>NTDB_id=844512 VZH39_RS01600 WP_338430629.1 333782..336235(+) (recG) [Synechococcus elongatus IITB8]
ATGACTCCTGCCACTCCCGCCCCCGATTGGCGTCGCCTCCAACAAGCCTTGGCGATCGAGGCAGAGCAGGGGTTTGGTGA
TCTTGTCGGGCGACAGTCCCGCTTCAGTGAATTTCTTAGTCAAGCTCTGCAAGATGCTGCAACTGCGATCGCAGATGAAC
GCTGGCAGCAATTGGCCCAAGCCTATCAGCGCTACGGCGAGCTGAGCGCCAGCCAACGCCAGCACCTCGTGGCTAACACG
CGGCGTCAAATTCATGAACAACAGCGGCGCAGCCAAGCCCGCGTTAGTGAAAACTCTCCTCCAGCCCGGCGCTTACCGCG
TAGTCAATCACCTGTGGCGACCACCACGGCTCAGACGGCGTTAGAGCAAGCGCTGACTTATCTCAAGGGGGTTGGACCTC
GGGTAGCGGCGCAACTGGAACGGCTAGAGCTACGAACCGTTCGCGATCTGCTGCATCACTACCCGCGCAACTATGTCGAT
TACGCTCGCCAAGTCAACATTCGCGCCCTTGAACCCGGTGAAACTGCGACCCTGATCGGCGCGGTTCAACGCTGCACCTG
CTTCACTAGCCCGCGCAATGCCAAGCTGACAATTTTGGAGCTGGTGGTGCGCGATGGCAGCGGTCAAATCCGGCTCAGCC
GCTTCTTTATGGGGACGCGCTACAGCGGTCGTGGCTGGCAGGAACAACAGCGACGGCTCTATCCACCGGGCACGATGATT
GCTGCCTCAGGCTTGGTCAAACGCAGTAAGTACGGCGTCACCCTCGATAACCCAGAAATTGAGGTTCTCGATAGCCCCGA
CAGCCCGATCGCTTCACTCAAAGTCGGTCGGATTGTCCCGATCTACCCGCTGACCGAAGGTGTGGCTGCCGACACCCTAC
GCCGGGCGATTGTGCAGGCTCTACCAGCGGCGGAGCAACTGCGCGATCCGTTGCCCACAGCGCTGCGCGAACAACATCAG
TTGCTGGTGCTCAATCAAGCGATCGCGGCCATTCACTTCCCTGAAACCCCAGAACTTCTGCAGCAGGCCCGCCGGCGACT
GGTCTTCGACGAGTTTCTCTACCTTCAGCTGGGTCTGTTGCAGCGACGAGCCCGACAACGAGCAGAGTCAGCAGCAGCGG
TTTTAGCCCCAACCGGTGAGTTGATCGATCGCTTCTATCAATTGCTGCCCTTCCAACTAACAGGTGCCCAGCAGCGGGTG
GTCAACGACATCCTGACCGACCTGCAGCAACCTTGGCCGATGAATCGATTGGTGCAAGGCGATGTTGGGTCTGGCAAAAC
GGTGGTCGCGATCGTCAGTCTCTTAGCCGCGATTCAAGCAGGCTATCAAGGAGCACTGATGGCTCCAACGGAAGTACTGG
CCGAGCAGCACTATCGCAAGCTAGTAGACTGGTGCACCCAACTGCATCTGCCCGTGGAGTTACTGACGGGTTCCACGCGC
GCGGCAAAACGGCGGGAAATTCAGCGATCGCTGGCAACGGGGGAACTGCCCCTGCTAGTCGGTACCCATGCATTGATTCA
GGATCCAGTTGATTTTCAAAATCTCGGCCTAGTGGTGATTGATGAGCAGCATCGCTTTGGCGTGGCGCAGCGAGCCAAAC
TACAGCAAAAAGGTGTCAATCCTCATGTCCTGACCATGACGGCGACGCCGATTCCGCGGACCTTGGCGCTGACTCTGCAT
GGTGATTTAGAAGTCAGTCAAATCGATGAATTACCACCGGGTCGGCAACCGATTCAAACCACGGCCCTAGGCCCTAGCGA
TCGCCAACATGCCCATGATTTGATGCGACGGGAAATCGCTCAAGGGCGTCAAGTTTATGTTGTCCTGCCACTGGTTGAGG
AGTCAGAAAAACTCGATTTGCGATCGGCGATCGAAGAATATCAGCGTCTTTCTCAAGTCTTTCCCGAGTTTCAGATCGGC
TTGCTGCACGGACGAATGAGTTCTGCCGAAAAAGACGCCGCGATCGGCGCTTTTCGCGATCGTCAGACCGACATTCTGGT
GTCGACAACAGTTGTTGAAGTTGGTGTCGATGTCCCGAATGCGACGGTCATGCTGATTGAACATGCCGAGCGATTTGGCT
TGTCGCAGTTACACCAATTACGGGGTCGAGTCGGTCGCGGCGGGGCGCGTTCCTATTGCCTCTTGATGAGTGCCTCGCGC
AGTGAAACTGCTCAACAGCGCCTCAAGGTGATGGAACAGTCGCAGGATGGCTTCTTCATTGCCGAAATGGATTTGCGATT
GCGCGGCCCTGGGCAAGTGCTCGGCACACGTCAATCGGGCTTACCTGATTTTGCCCTTGCCAGTTTGGTTGAAGACCAAG
ATGTTCTCGACTTAGCCCGCACAACCGCCGAAACATTAATTGAGCAAGATCCAGAGCTGTCGCGATCGCCTTTGCTCAAA
CAAGAACTCGAAGCTCGTTATCGACGGCTGATGGGTGGCATGATTTTGACTTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(396-551)

Helicase conserved C-terminal domain (Helicase_C)

(598-708)

RecG wedge domain (RecG_wedge)

(126-301)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(735-796)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

43.391

85.19

0.37
  recG Neisseria meningitidis strain C311

44.345

82.252

0.365