Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   VZH09_RS10875 Genome accession   NZ_CP143859
Coordinates   2181274..2182539 (-) Length   421 a.a.
NCBI ID   WP_338461508.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB7     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2176274..2187539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH09_RS10860 (VZH09_10860) ligA 2177002..2179041 (-) 2040 WP_338461505.1 NAD-dependent DNA ligase LigA -
  VZH09_RS10865 (VZH09_10865) hoxE 2179161..2179658 (+) 498 WP_338441378.1 bidirectional hydrogenase complex protein HoxE -
  VZH09_RS10870 (VZH09_10870) - 2179658..2181262 (+) 1605 WP_338461506.1 NuoF family protein -
  VZH09_RS10875 (VZH09_10875) cinA 2181274..2182539 (-) 1266 WP_338461508.1 competence/damage-inducible protein A Machinery gene
  VZH09_RS10880 (VZH09_10880) - 2182543..2183622 (-) 1080 WP_338461510.1 MraY family glycosyltransferase -
  VZH09_RS10885 (VZH09_10885) glyA 2183644..2184927 (-) 1284 WP_208674676.1 serine hydroxymethyltransferase -
  VZH09_RS10890 (VZH09_10890) dusB 2185115..2186125 (-) 1011 WP_338461512.1 tRNA dihydrouridine synthase DusB -
  VZH09_RS10895 (VZH09_10895) - 2186203..2186511 (+) 309 WP_338461514.1 carbon dioxide-concentrating mechanism protein CcmK -
  VZH09_RS10900 (VZH09_10900) - 2186556..2186897 (+) 342 WP_011243539.1 carbon dioxide-concentrating mechanism protein CcmK -
  VZH09_RS10905 (VZH09_10905) - 2187009..2187380 (+) 372 WP_338461515.1 DUF1823 family protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 44958.03 Da        Isoelectric Point: 4.7080

>NTDB_id=844498 VZH09_RS10875 WP_338461508.1 2181274..2182539(-) (cinA) [Synechococcus elongatus IITB7]
MSDPRYCAEIISVGTELLLGNILNSNAQFLAEELAQLGIPHYFQTVVGDNRDRLQAAVKIAAERSGLLIFTGGLGPTPDD
LTTETLAACFDTPLAERPEVIANIEAKFARRGRVLTDNNRKQALLPVGAELLPNPSGTAPGMIWSPRSGLTLMTFPGVPA
EMRRMWAETAVPWLHQNGWCRSILVSRLLRFWGISESALAEKVAPFFDLQNPTVAPYANNGEVKLRITAAATSEAEGQAL
IAPIEQELRAIAGRDCYGADSDSLASVVGEILRDRGQTLSVAESCTGGGLGQLITTIPGSSQWFWGGAIAYDNRVKQSLL
NVSAETLAESGAVSAAVAEQMAIGIQQRLGTTWGISITGIAGPDGGTETKPVGLVYIGIAGPSGCFSVERRWGAERGRDW
VRQLSAGDALDQLRRSLLTED

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=844498 VZH09_RS10875 WP_338461508.1 2181274..2182539(-) (cinA) [Synechococcus elongatus IITB7]
ATGTCGGATCCCCGTTACTGCGCCGAGATTATCAGTGTCGGCACAGAGTTGCTGTTGGGCAACATCCTCAACAGCAATGC
TCAGTTTTTAGCCGAAGAGCTCGCGCAACTGGGGATCCCTCACTACTTCCAAACGGTGGTGGGCGACAACCGCGATCGCT
TGCAGGCGGCGGTCAAAATTGCGGCCGAGCGATCGGGGCTGCTGATTTTCACGGGCGGTCTAGGGCCAACCCCAGATGAC
CTGACCACCGAGACTTTAGCTGCTTGTTTCGATACGCCCTTGGCCGAGCGTCCCGAGGTGATCGCTAATATTGAGGCCAA
GTTTGCGCGGCGCGGGCGGGTCTTGACCGATAACAACCGCAAGCAAGCCCTGTTACCTGTGGGGGCAGAACTGCTGCCCA
ATCCCAGCGGCACCGCTCCCGGCATGATTTGGTCGCCGCGATCGGGCCTGACGCTGATGACCTTTCCGGGGGTACCGGCA
GAAATGCGCCGGATGTGGGCGGAAACAGCAGTCCCATGGCTCCATCAAAACGGTTGGTGTCGCTCAATCCTTGTTAGTCG
GCTGCTGCGGTTTTGGGGCATTTCCGAGTCGGCTCTGGCCGAAAAGGTAGCGCCCTTTTTTGACCTTCAAAATCCAACGG
TTGCCCCCTACGCGAACAACGGCGAAGTGAAGCTGCGGATCACGGCTGCGGCGACTTCCGAAGCAGAGGGACAAGCCCTA
ATTGCTCCGATCGAGCAAGAATTGCGGGCGATCGCAGGCAGGGATTGCTACGGTGCCGACAGCGATAGCTTGGCCTCAGT
GGTGGGTGAGATTTTGCGCGATCGCGGGCAGACTTTGTCAGTCGCCGAATCCTGCACGGGTGGTGGCCTCGGTCAGCTGA
TCACCACTATTCCCGGCAGCTCTCAATGGTTCTGGGGCGGCGCGATCGCCTACGACAACCGCGTGAAACAATCGCTCCTC
AACGTCTCGGCAGAAACCTTGGCTGAATCTGGTGCAGTCAGTGCAGCGGTCGCAGAGCAGATGGCGATCGGCATTCAACA
GCGCTTAGGGACGACCTGGGGCATCTCGATTACCGGCATTGCAGGACCGGATGGCGGCACAGAAACTAAGCCCGTGGGAT
TGGTCTACATCGGCATTGCAGGACCATCGGGCTGCTTTAGCGTAGAGCGGCGTTGGGGTGCGGAGCGTGGGCGAGACTGG
GTGCGGCAACTGAGCGCAGGCGATGCACTCGATCAACTGCGGCGATCGCTGCTCACTGAAGACTAA

Domains

Predicted by InterProScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-175)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-258)

Competence-damaged protein (CinA)

(262-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

40.421

100

0.411
  cinA Streptococcus pneumoniae Rx1

40.662

100

0.409
  cinA Streptococcus pneumoniae R6

40.662

100

0.409
  cinA Streptococcus pneumoniae R36A

40.662

100

0.409
  cinA Streptococcus pneumoniae D39

40.426

100

0.406
  cinA Streptococcus mitis NCTC 12261

40.189

100

0.404
  cinA Streptococcus mitis SK321

40.189

100

0.404
  cinA Bacillus subtilis subsp. subtilis str. 168

44.118

88.836

0.392
  cinA Streptococcus suis isolate S10

37.232

99.525

0.371
  cinA Streptococcus mutans UA159

37.321

99.287

0.371