Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VZH09_RS10370 Genome accession   NZ_CP143859
Coordinates   2083095..2084534 (-) Length   479 a.a.
NCBI ID   WP_338461428.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2078095..2089534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH09_RS10345 (VZH09_10345) mreD 2079486..2080169 (-) 684 WP_228383154.1 rod shape-determining protein MreD -
  VZH09_RS10350 (VZH09_10350) mreC 2080130..2080879 (-) 750 WP_338461425.1 rod shape-determining protein MreC -
  VZH09_RS10355 (VZH09_10355) - 2080904..2081905 (-) 1002 WP_275937699.1 rod shape-determining protein -
  VZH09_RS10360 (VZH09_10360) ssb 2082134..2082496 (+) 363 WP_338461426.1 single-stranded DNA-binding protein Machinery gene
  VZH09_RS10365 (VZH09_10365) - 2082624..2083055 (+) 432 WP_338461427.1 GNAT family N-acetyltransferase -
  VZH09_RS10370 (VZH09_10370) comA 2083095..2084534 (-) 1440 WP_338461428.1 phospholipase D-like domain-containing protein Machinery gene
  VZH09_RS10375 (VZH09_10375) - 2084696..2085784 (+) 1089 WP_338461429.1 NAD-binding protein -
  VZH09_RS10380 (VZH09_10380) - 2085910..2086557 (+) 648 WP_338461430.1 Coq4 family protein -
  VZH09_RS10385 (VZH09_10385) - 2086604..2087644 (-) 1041 WP_338461431.1 hypothetical protein -
  VZH09_RS10390 (VZH09_10390) - 2087674..2088891 (-) 1218 WP_338461432.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 52799.23 Da        Isoelectric Point: 5.9133

>NTDB_id=844496 VZH09_RS10370 WP_338461428.1 2083095..2084534(-) (comA) [Synechococcus elongatus IITB7]
MKPGVIAFLLGLLTACQAPLAQILPVAGGGSTRWDANAPLQVAFNHDPDQRFTDGLGRDREGDDLEGRLFASLEQATTSI
DVAVQEIQLPRLATVLAQKHQAGIPVRVILENQYRQPWSQRLSAPMSDRDRQRLENYRQLADRNRDGQLSPAEIATGDAV
VILERAGVPILDDTADGSKGSGLMHHKFAIIDRQWVVTGSANWTASDFFGDPGRPASRGNANHLLWFRSPAIAATFQTEF
DLMWGDGPGNLPDSLFGRAKPPRSPQSVRVGQTRVLVQFSPSSQRLPWEQSTNGTIARYLTQAQQQVDLALFVFSEQAIA
DVLEARSQQGTQIRLLIDPGFAYRPYSELLDAFGLALPDRDCRVEPNNRPWATPLKTAGVPRLAPGDTLHHKFAVIDRQR
VLTGSHNWSAAANENNDETFLVIEDATMAARFSAEFERLYASAFLGIPPALQRRVNEANRRCGSRLETAPSRDSAEPED

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=844496 VZH09_RS10370 WP_338461428.1 2083095..2084534(-) (comA) [Synechococcus elongatus IITB7]
ATGAAGCCTGGAGTGATCGCTTTTCTACTGGGGCTGCTCACCGCCTGCCAAGCGCCGCTCGCGCAGATTCTCCCCGTTGC
TGGCGGTGGCTCCACTCGTTGGGATGCCAATGCGCCTCTACAGGTTGCTTTTAATCACGATCCAGACCAGCGATTTACCG
ACGGCTTAGGGCGCGATCGCGAGGGAGATGACCTGGAAGGGCGACTCTTTGCCAGCTTGGAACAAGCAACAACTTCAATC
GATGTCGCGGTTCAGGAAATCCAGCTTCCCCGACTGGCAACGGTCTTGGCCCAAAAACACCAGGCGGGCATCCCGGTTCG
CGTCATTTTGGAAAACCAATATCGCCAGCCCTGGAGTCAGCGCCTCTCTGCCCCGATGAGCGATCGCGATCGGCAACGAC
TGGAGAACTACCGGCAACTGGCCGATCGCAATCGAGATGGCCAGCTCAGTCCAGCTGAAATTGCCACGGGAGATGCTGTC
GTCATCCTTGAGCGTGCTGGGGTGCCGATCCTGGATGACACCGCTGATGGCAGCAAAGGCAGCGGCCTCATGCACCACAA
GTTTGCAATCATCGATCGCCAATGGGTCGTCACCGGTTCAGCCAACTGGACGGCCAGCGATTTCTTTGGTGATCCGGGTC
GACCGGCCAGCCGAGGCAATGCCAATCATCTGCTCTGGTTCCGCAGTCCTGCGATCGCTGCTACCTTCCAAACAGAATTT
GACCTCATGTGGGGAGATGGCCCCGGTAACTTGCCCGACAGTCTGTTTGGTCGGGCGAAGCCGCCGCGATCGCCGCAATC
AGTGCGTGTGGGGCAAACCCGTGTCCTGGTGCAGTTTTCGCCCTCCAGCCAGCGATTGCCTTGGGAGCAAAGCACCAATG
GCACGATCGCTCGTTACCTCACGCAAGCCCAACAGCAGGTCGATCTGGCGCTCTTTGTTTTTTCCGAGCAGGCGATCGCG
GATGTTTTGGAAGCGCGATCGCAGCAAGGCACCCAGATTCGTCTGCTGATTGACCCTGGCTTTGCCTATCGGCCCTACAG
CGAACTGCTGGATGCGTTTGGCCTAGCGCTACCCGATCGCGACTGCCGTGTTGAGCCTAACAATCGCCCCTGGGCAACAC
CACTGAAGACTGCCGGAGTGCCGCGGTTGGCGCCGGGCGATACGTTGCATCACAAGTTCGCCGTGATCGATCGCCAGCGT
GTGCTGACCGGATCCCACAACTGGAGTGCAGCGGCCAACGAAAACAACGACGAAACCTTTCTGGTTATTGAGGATGCAAC
CATGGCAGCTCGATTCAGTGCTGAATTTGAGCGACTCTATGCCAGTGCGTTCTTAGGAATCCCGCCAGCTCTACAACGGC
GAGTCAACGAGGCTAATCGCCGCTGTGGGAGTCGATTGGAAACAGCACCCAGCCGAGATTCTGCAGAGCCGGAAGACTAA

Domains

Predicted by InterProScan.

PLD-like domain (PLDc_2)

(71-244)

PLD-like domain (PLDc_2)

(298-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

45.588

99.374

0.453