Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VZH09_RS10360 Genome accession   NZ_CP143859
Coordinates   2082134..2082496 (+) Length   120 a.a.
NCBI ID   WP_338461426.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2077134..2087496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH09_RS10335 (VZH09_10335) - 2077153..2077905 (-) 753 WP_338461422.1 cbb3-type cytochrome c oxidase subunit II -
  VZH09_RS10340 (VZH09_10340) - 2077902..2079353 (-) 1452 WP_338461424.1 cbb3-type cytochrome c oxidase subunit I -
  VZH09_RS10345 (VZH09_10345) mreD 2079486..2080169 (-) 684 WP_228383154.1 rod shape-determining protein MreD -
  VZH09_RS10350 (VZH09_10350) mreC 2080130..2080879 (-) 750 WP_338461425.1 rod shape-determining protein MreC -
  VZH09_RS10355 (VZH09_10355) - 2080904..2081905 (-) 1002 WP_275937699.1 rod shape-determining protein -
  VZH09_RS10360 (VZH09_10360) ssb 2082134..2082496 (+) 363 WP_338461426.1 single-stranded DNA-binding protein Machinery gene
  VZH09_RS10365 (VZH09_10365) - 2082624..2083055 (+) 432 WP_338461427.1 GNAT family N-acetyltransferase -
  VZH09_RS10370 (VZH09_10370) comA 2083095..2084534 (-) 1440 WP_338461428.1 phospholipase D-like domain-containing protein Machinery gene
  VZH09_RS10375 (VZH09_10375) - 2084696..2085784 (+) 1089 WP_338461429.1 NAD-binding protein -
  VZH09_RS10380 (VZH09_10380) - 2085910..2086557 (+) 648 WP_338461430.1 Coq4 family protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13520.16 Da        Isoelectric Point: 7.9752

>NTDB_id=844495 VZH09_RS10360 WP_338461426.1 2082134..2082496(+) (ssb) [Synechococcus elongatus IITB7]
MSLNVVNLVGRVGRDPEARYFESGSVVCKFSLAVNRRTRNDEPDWFNVEFWGREAQVAIDYVKKGSLIGISGALKIESWT
DRDGKQRTTSVVRGNRLELLGSRRDQEGGMAPRDPDSDLF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=844495 VZH09_RS10360 WP_338461426.1 2082134..2082496(+) (ssb) [Synechococcus elongatus IITB7]
ATGAGCTTAAATGTTGTCAACTTGGTGGGGCGCGTGGGCCGCGACCCTGAGGCTCGCTACTTCGAGTCCGGCTCAGTAGT
CTGTAAGTTTTCGCTGGCGGTCAATCGCCGCACCCGGAATGATGAACCCGACTGGTTCAACGTGGAGTTTTGGGGGCGCG
AGGCACAAGTTGCGATCGACTATGTCAAAAAAGGCAGCCTGATCGGGATCAGTGGCGCCCTCAAAATCGAAAGCTGGACC
GATCGCGATGGCAAGCAGCGAACCACTTCTGTGGTGAGGGGCAATCGTCTCGAACTGCTCGGCTCGCGCCGCGATCAGGA
AGGTGGGATGGCACCTCGAGATCCCGATAGCGATTTGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

37.5

100

0.375