Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSY31_RS01820 Genome accession   NZ_CP127834
Coordinates   343728..344165 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain Ag109     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 338728..349165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSY31_RS01795 (NSY31_01795) - 339748..340884 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  NSY31_RS01800 (NSY31_01800) - 340899..341333 (+) 435 WP_063096155.1 RDD family protein -
  NSY31_RS01805 (NSY31_01805) - 341405..341728 (+) 324 WP_052827031.1 YckD family protein -
  NSY31_RS01810 (NSY31_01810) - 341832..343268 (+) 1437 WP_098080961.1 family 1 glycosylhydrolase -
  NSY31_RS01815 (NSY31_01815) nin/comJ 343309..343707 (-) 399 WP_020955304.1 competence protein ComJ Regulator
  NSY31_RS01820 (NSY31_01820) nucA/comI 343728..344165 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSY31_RS01825 (NSY31_01825) hxlB 344525..345082 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  NSY31_RS01830 (NSY31_01830) hxlA 345079..345714 (-) 636 WP_025284209.1 3-hexulose-6-phosphate synthase -
  NSY31_RS01835 (NSY31_01835) - 345946..346308 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=844495 NSY31_RS01820 WP_003156588.1 343728..344165(-) (nucA/comI) [Bacillus velezensis strain Ag109]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=844495 NSY31_RS01820 WP_003156588.1 343728..344165(-) (nucA/comI) [Bacillus velezensis strain Ag109]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641