Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   VZH09_RS08285 Genome accession   NZ_CP143859
Coordinates   1691064..1692410 (-) Length   448 a.a.
NCBI ID   WP_338461114.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB7     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686064..1697410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH09_RS08255 (VZH09_08255) - 1686247..1687146 (+) 900 WP_338461109.1 alpha/beta fold hydrolase -
  VZH09_RS08260 (VZH09_08260) tsf 1687230..1687895 (-) 666 WP_208678645.1 translation elongation factor Ts -
  VZH09_RS08265 (VZH09_08265) rpsB 1687998..1688753 (-) 756 WP_208675740.1 30S ribosomal protein S2 -
  VZH09_RS08270 (VZH09_08270) - 1689135..1689419 (+) 285 WP_208675738.1 DUF4278 domain-containing protein -
  VZH09_RS08275 (VZH09_08275) - 1689515..1690201 (-) 687 WP_338461111.1 lecithin retinol acyltransferase family protein -
  VZH09_RS08280 (VZH09_08280) - 1690225..1691067 (-) 843 WP_338461113.1 alpha/beta hydrolase -
  VZH09_RS08285 (VZH09_08285) clpX 1691064..1692410 (-) 1347 WP_338461114.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  VZH09_RS08290 (VZH09_08290) clpP 1692423..1693145 (-) 723 WP_323368522.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  VZH09_RS08295 (VZH09_08295) tig 1693237..1694661 (-) 1425 WP_338461115.1 trigger factor -
  VZH09_RS08300 (VZH09_08300) - 1694929..1695855 (+) 927 WP_338461116.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  VZH09_RS08305 (VZH09_08305) - 1695915..1697243 (+) 1329 WP_338461117.1 PhoH family protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49653.06 Da        Isoelectric Point: 5.6571

>NTDB_id=844490 VZH09_RS08285 WP_338461114.1 1691064..1692410(-) (clpX) [Synechococcus elongatus IITB7]
MSRYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVDLCNEILDEELFDGNANPAPPPGGVKPAAAAASHQGPRKPKRSL
TLSQIPKPHDIKRYLDHHVIGQNEAKKMLSVAVYNHYKRLAYQQSAEEAGEAIEIQKSNILLIGPTGCGKTLLAQTLAKL
LDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDIEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKML
EGTIANVPPQGGRKHPYQDCIQIDTRNILFICGGAFVGLEKLVDRRLGKKSIGFVHPEETKTKEQRAAAILRHMEPEDLV
QFGLIPEFIGRMPVTAVLDPLDEVALTEILTEPRDALVKQYQKLMHMDSVELEFRQDAIEAIAREAFRRKTGARALRGIV
EEIMLEVMYELPSRQDVTHCTITREMVEKRSSADVLLHPSSLPTPESA

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=844490 VZH09_RS08285 WP_338461114.1 1691064..1692410(-) (clpX) [Synechococcus elongatus IITB7]
ATGTCGAGATACGACTCTCACCTGAAGTGCTCTTTTTGCGGGAAATCCCAAGAGCAGGTACGTAAGCTCATCGCCGGACC
TGGAGTTTACATTTGTGATGAATGCGTCGACCTCTGTAACGAGATCCTCGACGAAGAATTATTTGACGGCAATGCCAATC
CTGCACCACCGCCAGGTGGCGTCAAACCCGCTGCTGCAGCTGCGAGTCATCAAGGACCTCGCAAGCCGAAGCGATCGCTA
ACGCTGTCGCAAATTCCCAAGCCCCACGACATCAAGCGCTATCTTGACCATCACGTCATTGGTCAAAATGAAGCCAAGAA
AATGTTGTCTGTGGCGGTTTATAACCACTACAAACGCTTGGCTTATCAGCAGTCAGCTGAAGAAGCAGGCGAAGCAATTG
AAATTCAGAAATCCAATATTCTGCTGATTGGTCCAACCGGCTGTGGCAAGACTCTGCTCGCTCAGACGTTAGCCAAATTG
CTGGATGTCCCCTTCGCAGTTGCCGACGCAACAACACTGACGGAAGCCGGCTATGTCGGGGAAGACGTCGAAAACATTCT
GCTACGGCTCTTGCAAGTAGCTGATCTCGACATCGAGGAGGCTCAACGCGGCATCATTTACATCGATGAAATCGACAAGA
TTGCGCGCAAGAGCGAAAATCCTTCGATCACGCGTGACGTCTCCGGGGAAGGCGTCCAGCAGGCTTTGCTGAAGATGCTA
GAAGGCACCATCGCCAATGTGCCGCCTCAGGGGGGTCGTAAGCATCCCTATCAGGACTGCATCCAAATCGACACGCGCAA
CATCCTGTTTATCTGTGGTGGCGCCTTTGTCGGTCTGGAAAAACTCGTCGATCGCCGCTTGGGCAAAAAATCGATTGGCT
TTGTCCACCCTGAAGAGACCAAAACCAAGGAACAGCGGGCGGCTGCCATCCTGCGCCACATGGAACCCGAAGATTTGGTG
CAGTTTGGTCTGATTCCTGAATTTATCGGTCGGATGCCGGTGACGGCGGTGTTGGATCCGCTAGACGAAGTGGCGCTGAC
GGAAATCCTGACGGAACCTCGGGACGCGCTGGTCAAGCAGTATCAGAAGCTGATGCACATGGACAGCGTCGAGCTGGAAT
TCCGCCAAGATGCGATCGAAGCGATCGCCCGCGAAGCCTTCCGTCGCAAGACCGGAGCTCGGGCACTGCGCGGCATCGTT
GAAGAGATCATGCTGGAAGTGATGTACGAGCTGCCGTCTCGCCAGGACGTCACTCACTGCACAATCACGCGGGAGATGGT
TGAGAAGCGCTCCAGTGCGGATGTGCTCTTGCATCCTTCGAGTTTGCCGACACCGGAATCCGCTTGA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(341-419)

AAA domain (Cdc48 subfamily) (AAA_2)

(136-334)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.84

94.643

0.538
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.804

95.536

0.504