Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QLQ02_RS05085 Genome accession   NZ_CP127833
Coordinates   1019342..1019779 (+) Length   145 a.a.
NCBI ID   WP_010332985.1    Uniprot ID   -
Organism   Bacillus mojavensis strain KRS009     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1014342..1024779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS05065 hxlR 1015529..1015891 (-) 363 WP_003241118.1 transcriptional activator HxlR -
  QLQ02_RS05070 hxlA 1016121..1016753 (+) 633 WP_286059065.1 3-hexulose-6-phosphate synthase -
  QLQ02_RS05075 hxlB 1016759..1017316 (+) 558 WP_010332987.1 6-phospho-3-hexuloisomerase -
  QLQ02_RS05080 tlpC 1017431..1019155 (+) 1725 WP_268449053.1 methyl-accepting chemotaxis protein TlpC -
  QLQ02_RS05085 nucA/comI 1019342..1019779 (+) 438 WP_010332985.1 DNA-entry nuclease Machinery gene
  QLQ02_RS05090 nin/comJ 1019806..1020204 (+) 399 WP_268449031.1 competence protein ComJ Regulator
  QLQ02_RS05095 - 1020240..1021673 (-) 1434 WP_268506299.1 family 1 glycosylhydrolase -
  QLQ02_RS05100 - 1021746..1022474 (-) 729 WP_268506298.1 AAA family ATPase -
  QLQ02_RS05105 - 1022621..1022956 (-) 336 WP_268506297.1 YckD family protein -
  QLQ02_RS05110 - 1023189..1023950 (-) 762 WP_284560174.1 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15987.71 Da        Isoelectric Point: 4.2036

>NTDB_id=844427 QLQ02_RS05085 WP_010332985.1 1019342..1019779(+) (nucA/comI) [Bacillus mojavensis strain KRS009]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDEQKTSQTEEYDETIAFPSERYPETANHIKDAISEGHSDVCTVDRDGAEERR
EQSLKDVPTKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=844427 QLQ02_RS05085 WP_010332985.1 1019342..1019779(+) (nucA/comI) [Bacillus mojavensis strain KRS009]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTTGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGAACAAAAAACGTCTCAAACAGAAGAATATGACGAAACAATAGCCTTCCCTTCTGAGCGTTATCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACTGTAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTGAAAGACGTACCTACCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGATGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

90.278

99.31

0.897