Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | JMH49_RS07450 | Genome accession | NZ_AP024270 |
| Coordinates | 1412637..1413260 (+) | Length | 207 a.a. |
| NCBI ID | WP_011173433.1 | Uniprot ID | Q72IW7 |
| Organism | Thermus thermophilus strain HB5018 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1407637..1418260
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMH49_RS07430 (TthHB5018_14730) | - | 1408370..1409776 (+) | 1407 | WP_201350818.1 | HD-GYP domain-containing protein | - |
| JMH49_RS07435 (TthHB5018_14740) | - | 1409827..1410318 (+) | 492 | WP_011173430.1 | DUF5317 domain-containing protein | - |
| JMH49_RS07440 (TthHB5018_14750) | - | 1410373..1411377 (+) | 1005 | WP_011173431.1 | homoisocitrate dehydrogenase | - |
| JMH49_RS07445 (TthHB5018_14760) | pilM | 1411511..1412644 (+) | 1134 | WP_201350819.1 | type IV pilus assembly protein PilM | Machinery gene |
| JMH49_RS07450 (TthHB5018_14770) | pilN | 1412637..1413260 (+) | 624 | WP_011173433.1 | competence protein | Machinery gene |
| JMH49_RS07455 (TthHB5018_14780) | pilO | 1413250..1413831 (+) | 582 | WP_011173434.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| JMH49_RS07460 (TthHB5018_14790) | pilW | 1413828..1414706 (+) | 879 | WP_201350820.1 | competence protein | Machinery gene |
| JMH49_RS07465 (TthHB5018_14800) | pilQ | 1414703..1416976 (+) | 2274 | WP_201350821.1 | secretin N-terminal domain-containing protein | Machinery gene |
| JMH49_RS07470 (TthHB5018_14810) | aroC | 1417035..1418186 (+) | 1152 | WP_011228640.1 | chorismate synthase | - |
Sequence
Protein
Download Length: 207 a.a. Molecular weight: 23035.51 Da Isoelectric Point: 9.7530
>NTDB_id=84442 JMH49_RS07450 WP_011173433.1 1412637..1413260(+) (pilN) [Thermus thermophilus strain HB5018]
MIRLNLLPKNLRRRVEPGWWRLLALLFALVVLGVLGLVHYTAYTELSLAKAERDQLQAEVEALRPFIAELGRLQEERKAL
EALLAIREGLEKNAVPWSQYLAAFINQIPRAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRIRVEFALQGEALSRE
ALVRFIRAFETSPRFGIEFQGASLDEGRGLYTFSARVGATGGESGAR
MIRLNLLPKNLRRRVEPGWWRLLALLFALVVLGVLGLVHYTAYTELSLAKAERDQLQAEVEALRPFIAELGRLQEERKAL
EALLAIREGLEKNAVPWSQYLAAFINQIPRAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRIRVEFALQGEALSRE
ALVRFIRAFETSPRFGIEFQGASLDEGRGLYTFSARVGATGGESGAR
Nucleotide
Download Length: 624 bp
>NTDB_id=84442 JMH49_RS07450 WP_011173433.1 1412637..1413260(+) (pilN) [Thermus thermophilus strain HB5018]
TTGATTAGGCTGAACCTTCTCCCCAAAAACCTCCGGCGCCGGGTGGAGCCGGGCTGGTGGCGCCTCCTCGCCCTCCTCTT
CGCCCTCGTGGTCCTCGGGGTCTTGGGGCTCGTCCACTACACCGCCTACACCGAGCTTTCCCTGGCCAAGGCGGAGCGGG
ACCAGCTCCAGGCGGAGGTGGAGGCCTTGAGGCCCTTCATCGCCGAGCTCGGCCGCCTGCAGGAGGAGCGTAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTGGAGAAAAACGCCGTGCCCTGGTCCCAGTACCTGGCCGCCTTCATCAACCA
GATCCCCAGGGCGGGGGGGCGCCTCGAGGTGGCCCTCCGCTCGGTGAGCGCCCGCGCCCTCTCGGAAGAGGAGGCCGCCC
GCCTGGCCCAGGAAGGCACCTACGACGGCAAGCGGATCCGGGTGGAGTTCGCCCTCCAGGGGGAGGCCCTGAGCCGGGAG
GCCCTGGTCCGGTTCATCCGGGCCTTTGAGACCTCCCCCCGGTTCGGCATTGAGTTCCAGGGGGCCTCCCTGGACGAGGG
CCGGGGGCTTTACACCTTCAGCGCCCGCGTGGGCGCAACGGGGGGTGAAAGCGGTGCTCGCTAG
TTGATTAGGCTGAACCTTCTCCCCAAAAACCTCCGGCGCCGGGTGGAGCCGGGCTGGTGGCGCCTCCTCGCCCTCCTCTT
CGCCCTCGTGGTCCTCGGGGTCTTGGGGCTCGTCCACTACACCGCCTACACCGAGCTTTCCCTGGCCAAGGCGGAGCGGG
ACCAGCTCCAGGCGGAGGTGGAGGCCTTGAGGCCCTTCATCGCCGAGCTCGGCCGCCTGCAGGAGGAGCGTAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTGGAGAAAAACGCCGTGCCCTGGTCCCAGTACCTGGCCGCCTTCATCAACCA
GATCCCCAGGGCGGGGGGGCGCCTCGAGGTGGCCCTCCGCTCGGTGAGCGCCCGCGCCCTCTCGGAAGAGGAGGCCGCCC
GCCTGGCCCAGGAAGGCACCTACGACGGCAAGCGGATCCGGGTGGAGTTCGCCCTCCAGGGGGAGGCCCTGAGCCGGGAG
GCCCTGGTCCGGTTCATCCGGGCCTTTGAGACCTCCCCCCGGTTCGGCATTGAGTTCCAGGGGGCCTCCCTGGACGAGGG
CCGGGGGCTTTACACCTTCAGCGCCCGCGTGGGCGCAACGGGGGGTGAAAGCGGTGCTCGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Thermus thermophilus HB27 |
100 |
100 |
1 |