Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   JMH49_RS07460 Genome accession   NZ_AP024270
Coordinates   1413828..1414706 (+) Length   292 a.a.
NCBI ID   WP_201350820.1    Uniprot ID   A0A7R7TEM9
Organism   Thermus thermophilus strain HB5018     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1408828..1419706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMH49_RS07435 (TthHB5018_14740) - 1409827..1410318 (+) 492 WP_011173430.1 DUF5317 domain-containing protein -
  JMH49_RS07440 (TthHB5018_14750) - 1410373..1411377 (+) 1005 WP_011173431.1 homoisocitrate dehydrogenase -
  JMH49_RS07445 (TthHB5018_14760) pilM 1411511..1412644 (+) 1134 WP_201350819.1 type IV pilus assembly protein PilM Machinery gene
  JMH49_RS07450 (TthHB5018_14770) pilN 1412637..1413260 (+) 624 WP_011173433.1 competence protein Machinery gene
  JMH49_RS07455 (TthHB5018_14780) pilO 1413250..1413831 (+) 582 WP_011173434.1 type 4a pilus biogenesis protein PilO Machinery gene
  JMH49_RS07460 (TthHB5018_14790) pilW 1413828..1414706 (+) 879 WP_201350820.1 competence protein Machinery gene
  JMH49_RS07465 (TthHB5018_14800) pilQ 1414703..1416976 (+) 2274 WP_201350821.1 secretin N-terminal domain-containing protein Machinery gene
  JMH49_RS07470 (TthHB5018_14810) aroC 1417035..1418186 (+) 1152 WP_011228640.1 chorismate synthase -
  JMH49_RS07475 (TthHB5018_14820) - 1418211..1418765 (+) 555 WP_011173438.1 shikimate kinase -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 29781.33 Da        Isoelectric Point: 4.7503

>NTDB_id=84444 JMH49_RS07460 WP_201350820.1 1413828..1414706(+) (pilW) [Thermus thermophilus strain HB5018]
MKNAWQRLKEAWANLPRSTKLLLAALLLVGGVALWYVGLYLPAQVAEAPTPAPSTQVIEAPPIPPLASQEEAKPQAEAPA
KEEAQAPASSQEEAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPASASRPAPVPEGPAVRVQTPAQAPQAAPATRPIPG
TSGALPAPKILSPALSAPLPQARETPPKVAVPTALVEAPLPGPEEKGAEKAPTPASPLERLVAEKGLRLSGTLLGPVSVA
ILESKEGYLVVPAGSPIPGTEAVVRQVEEGSVTLALKEETLSLSLVQAGGGQ

Nucleotide


Download         Length: 879 bp        

>NTDB_id=84444 JMH49_RS07460 WP_201350820.1 1413828..1414706(+) (pilW) [Thermus thermophilus strain HB5018]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGCCAACCTGCCCAGGTCCACCAAGCTCCTCCTGGCGGCCCTCCT
TCTCGTGGGGGGCGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAGCGCCCACCCCGGCCCCCT
CCACGCAGGTCATCGAGGCCCCCCCGATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
AAAGAGGAGGCCCAGGCGCCCGCTTCTTCCCAAGAGGAGGCCCAGGCGCCCCCGCCCGCCCCCGTGGCCCGGGCCGAGCC
CCCGCCCCCGAACCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCTCCGGCCTCCGCCTCCCGCCCGGCGCCCG
TCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCCGCCCAAGCCCCCCAGGCGGCCCCCGCCACCCGGCCCATCCCCGGG
ACCTCCGGCGCCCTCCCGGCGCCCAAGATCCTCTCCCCCGCGCTGTCCGCCCCCCTGCCCCAGGCCAGGGAAACGCCGCC
CAAGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAAGGGGGCGGAGAAGGCCCCCACCC
CGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGACCCTGCTCGGCCCCGTGAGCGTGGCC
ATCCTGGAGAGCAAGGAGGGCTACCTCGTCGTCCCGGCGGGAAGCCCCATCCCCGGCACGGAGGCCGTGGTGCGCCAGGT
GGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAGCCTGTCCCTCGTCCAAGCTGGAGGTGGCCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7R7TEM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

98.63

100

0.986

Multiple sequence alignment