Detailed information    

insolico Bioinformatically predicted

Overview


Name   addA   Type   Machinery gene
Locus tag   QLQ02_RS01295 Genome accession   NZ_CP127833
Coordinates   220447..224151 (-) Length   1234 a.a.
NCBI ID   WP_286058758.1    Uniprot ID   -
Organism   Bacillus mojavensis strain KRS009     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context


Location: 215447..229151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS01280 hlpB 215492..215794 (-) 303 WP_229147779.1 HNH nuclease-like protein HlpB -
  QLQ02_RS01285 sbcC 215808..219200 (-) 3393 WP_286058756.1 exonuclease subunit SbcC -
  QLQ02_RS01290 sbcD 219197..220375 (-) 1179 WP_286058757.1 exonuclease subunit SbcD -
  QLQ02_RS01295 addA 220447..224151 (-) 3705 WP_286058758.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  QLQ02_RS01300 addB 224138..227638 (-) 3501 WP_286058759.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  QLQ02_RS01305 - 227824..228237 (+) 414 Protein_259 rubrerythrin family protein -
  QLQ02_RS01310 - 228363..228677 (+) 315 WP_010333659.1 four-helix bundle copper-binding protein -

Sequence


Protein


Download         Length: 1234 a.a.        Molecular weight: 141464.95 Da        Isoelectric Point: 5.1871

>NTDB_id=844414 QLQ02_RS01295 WP_286058758.1 220447..224151(-) (addA) [Bacillus mojavensis strain KRS009]
MNIPKPADSTWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEEHPIDVDRLLVVTFTNASAAEMKHRIADA
LEKELVKRPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELLGDEVLDELFEDEYAKGDKA
FFELVDRYTTDRHDLDLQYLVKQVYEYSRSHPDPETWLKSFVHLYDVTEKSPIGELPFYPYVKEDIAMVLEGAKEKLQRA
LELTKAPGGPAPRAKNFLDDLAQIDDLIQHQDDFNELYKRVPAVSFKRAKAVKGDEFDPVLLDEATDLRNGAKKLLEKLK
TDYFTRSPEQHLKSLADMKPVIETLVQLVISYGKRFEAAKQEKSLIDFSDLEHYCLSILTAVNEKGEREPSEAARFYQEQ
FHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESGEGSGRKIDLNKNFRS
RADILDSTNFLFKQLMGGKIGEVDYDEQAELKLGAAYPENNETETELLLIDKSEETDAGEEAEELETVQFEAKAIAKEIR
KLISSPFKVYDGKTKTHRNIQYRDIVVLLRSMPWAPQIMEELRAQGIPVYANLTSGYFDAVEVSVVLSVLKVIDNPYQDI
PLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRNDELYQKLQTFYGHLQKWRAFSKNHSVSELIWEVYRD
TKYMDYVGGMPGGKQRQANLRVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLE
FPVVFTAGLGRNFNMMDLNKSYLLDKELGFGTKFIHPEWRISYPTLPLIAMKKKMRRELLSEELRVLYVALTRAKEKLFL
VGSCKDHQKQLAKWQASASQADWLLPEFDRYQAKTYLDFIGPALVRHRDLESLAEGGAAAASDISGHPARFAIQMIHSYD
LLDDELEERLEEKSERLEAILRGEPVPGTFAYEEKARERLAWKYTHHEVTQIRTKQSVSEIKRRREYEDEYSGRAPVTPA
DGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLTHVPTTEEAERTVRHLYEKELLTEEQQSAIDIEEIVQFFHTEIGE
KLIGAKWKDREVPFSLALPAKEIYPDAEEADEPLLVQGIIDCLYETEDGLYLLDYKTDRIEGKFQHGFEGAAPILKKRYE
TQIQLYTKAVEQIAQTKVKGCALYFFDGGHILTL

Nucleotide


Download         Length: 3705 bp        

>NTDB_id=844414 QLQ02_RS01295 WP_286058758.1 220447..224151(-) (addA) [Bacillus mojavensis strain KRS009]
ATGAACATTCCTAAACCGGCAGACAGCACATGGACAGATGACCAGTGGAATGCCATCGTCTCAACCGGCCAGGATATCCT
TGTGGCAGCGGCGGCAGGATCTGGTAAAACGGCTGTTCTTGTGGAAAGAATGATCCGGAAAATCACGGCGGAAGAACATC
CGATCGATGTAGACCGGCTTCTTGTTGTCACCTTTACAAACGCCTCAGCTGCAGAGATGAAACACCGGATTGCGGATGCG
CTGGAAAAAGAGCTGGTAAAACGCCCAGGTTCGCTGCATATCCGTCGCCAGCTGTCGCTGTTAAACCGGGCCAGCATTTC
AACGCTTCATTCGTTTTGCCTGCAGGTGCTGAAAAAATATTACTACCTGATTGATCTTGATCCGGGCTTTCGGATTGCTG
ATCAGACAGAAGGCGAACTTCTCGGGGACGAGGTGCTTGATGAGCTGTTTGAGGATGAATATGCAAAGGGCGATAAGGCG
TTTTTTGAGCTTGTCGACCGATACACAACTGACCGGCATGACTTAGATCTGCAATATCTCGTGAAACAGGTGTATGAGTA
TTCCCGTTCCCACCCAGATCCGGAAACATGGCTGAAAAGCTTTGTTCATTTGTATGATGTAACAGAAAAGAGCCCGATCG
GGGAACTGCCGTTTTATCCATATGTCAAAGAAGATATTGCGATGGTGCTGGAGGGAGCAAAGGAAAAGCTTCAGCGTGCT
CTTGAGCTGACAAAAGCGCCGGGCGGACCTGCGCCGCGCGCTAAAAATTTTCTCGATGATCTCGCGCAGATTGATGACCT
GATTCAGCATCAGGATGACTTCAATGAACTTTATAAGCGCGTGCCCGCTGTCTCCTTTAAGCGTGCAAAAGCGGTGAAAG
GGGACGAGTTTGACCCCGTCTTGCTTGATGAAGCGACAGACTTGAGAAATGGCGCCAAAAAACTCCTTGAAAAACTCAAA
ACCGATTACTTCACCAGAAGCCCGGAGCAGCATTTAAAGAGTTTGGCTGACATGAAGCCTGTCATTGAAACACTCGTACA
GCTTGTCATCAGCTACGGGAAACGGTTTGAAGCCGCAAAGCAGGAGAAATCGCTCATTGATTTTTCTGATTTGGAGCATT
ATTGCCTGTCCATCTTGACGGCTGTGAACGAAAAGGGTGAACGTGAACCAAGTGAGGCGGCAAGATTTTATCAGGAGCAG
TTTCATGAGGTGCTCGTCGATGAATATCAGGATACCAACCTGGTGCAGGAATCCATTCTTCAGCTCGTCACAAGCGGGCC
GGAAGAGACAGGAAACCTGTTTATGGTAGGAGATGTCAAGCAGTCGATTTATCGATTCAGGCTAGCGGAGCCGCTCCTTT
TTCTGTCTAAGTACAAACGGTTTACAGAGAGCGGAGAAGGGTCGGGCCGGAAAATCGACTTGAACAAAAACTTTCGAAGC
AGGGCTGATATTTTAGACAGCACAAACTTTTTGTTCAAACAGCTGATGGGCGGCAAAATCGGCGAGGTCGATTATGATGA
ACAGGCTGAACTGAAACTCGGCGCGGCGTATCCGGAAAACAATGAAACGGAAACCGAACTGCTGCTGATTGACAAGTCCG
AGGAGACGGACGCAGGAGAGGAAGCGGAAGAGCTGGAAACGGTACAGTTCGAGGCAAAAGCGATCGCTAAGGAAATACGC
AAGCTGATCTCATCGCCATTTAAGGTATATGACGGAAAAACGAAGACACACCGCAATATTCAATACCGCGATATCGTGGT
TTTGCTGCGATCCATGCCGTGGGCCCCGCAAATCATGGAAGAGCTGAGAGCTCAGGGCATACCGGTTTACGCCAATTTAA
CATCAGGCTACTTTGATGCGGTGGAAGTGTCTGTGGTGCTTTCTGTCCTGAAAGTGATTGATAACCCGTATCAGGATATT
CCGCTTGCTTCCGTTCTGCGTTCACCGATTGTCGGTGCTGACGAGAACGAACTGTCTTTGATCCGGCTTGAAAACAAAAA
GGCGCCGTACTATGAAGCAATGAAAGACTATCTGGCAGCCGGCGACCGAAACGATGAGCTTTATCAAAAGCTGCAAACGT
TTTACGGACATTTGCAAAAATGGCGCGCATTTTCGAAAAACCATTCGGTGTCCGAGCTGATCTGGGAAGTGTACCGCGAC
ACAAAGTATATGGATTATGTTGGCGGAATGCCGGGCGGCAAACAGCGGCAGGCTAACTTGCGCGTCCTCTATGACCGGGC
ACGCCAATATGAATCGACGGCATTTCGCGGCCTGTTTCGTTTCTTGAGGTTTATCGAACGCATGCAGGAACGCGGCGATG
ACCTGGGAACGGCGAGAGCGTTAAGCGAACAGGAAGATGTTGTCCGCTTAATGACCATTCACAGCAGCAAAGGGCTCGAA
TTTCCAGTCGTTTTCACAGCGGGACTTGGCCGGAATTTCAACATGATGGATCTCAACAAATCCTATCTGCTGGACAAGGA
GCTTGGGTTTGGCACGAAATTTATCCATCCTGAATGGCGCATCAGCTATCCGACGCTTCCGCTCATCGCGATGAAGAAAA
AAATGCGCAGGGAGCTGCTGTCTGAGGAATTGCGTGTGCTCTATGTTGCTTTAACGCGGGCAAAGGAGAAGCTGTTTCTT
GTCGGCTCATGCAAGGATCACCAGAAACAGCTGGCAAAATGGCAGGCATCGGCATCCCAAGCTGACTGGCTCCTGCCGGA
ATTTGATCGCTATCAGGCGAAAACGTATTTGGATTTCATTGGACCTGCTCTTGTCAGACACAGAGACTTGGAGTCTTTGG
CTGAGGGCGGTGCGGCAGCGGCTTCTGATATATCAGGCCATCCGGCCCGCTTTGCTATTCAAATGATCCATTCATATGAT
CTGCTTGATGATGAGCTGGAAGAGAGACTGGAAGAAAAAAGCGAGCGTCTTGAAGCGATCCTCCGCGGGGAACCGGTTCC
CGGCACGTTTGCATATGAGGAAAAAGCTCGCGAGCGGCTGGCCTGGAAGTATACCCATCACGAGGTGACACAAATTCGCA
CGAAGCAGTCTGTGTCTGAGATTAAGAGAAGAAGAGAGTACGAGGACGAATACAGCGGACGGGCCCCCGTTACACCGGCT
GATGGAAGCATTCTGTACAGACGCCCGGCTTTCATGATGAAAAAAGGCCTGACAGCAGCAGAGAAAGGAACAGCTATGCA
TACGGTCATGCAGCATATTCCGCTGACACATGTGCCGACGACAGAAGAAGCGGAACGGACAGTGCGGCACCTTTATGAAA
AAGAGCTGCTCACCGAAGAACAGCAATCCGCTATCGATATTGAGGAAATTGTTCAATTTTTCCATACCGAAATTGGCGAA
AAACTGATCGGCGCTAAATGGAAGGACCGTGAAGTTCCATTCAGTTTGGCGCTTCCGGCAAAAGAGATTTATCCTGATGC
GGAGGAGGCGGATGAGCCGCTATTGGTGCAGGGAATCATCGATTGTCTCTACGAAACAGAGGACGGCTTATATTTGCTGG
ACTATAAAACAGACCGGATTGAGGGGAAATTCCAGCACGGCTTTGAAGGAGCAGCCCCGATCCTGAAAAAGAGATATGAA
ACGCAAATTCAGCTGTACACAAAGGCCGTTGAACAAATTGCTCAAACGAAGGTAAAAGGGTGTGCGCTTTATTTCTTTGA
CGGAGGGCATATTCTGACTTTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addA Bacillus subtilis subsp. subtilis str. 168

93.355

100

0.934