Detailed information    

insolico Bioinformatically predicted

Overview


Name   addB   Type   Machinery gene
Locus tag   QLQ02_RS01300 Genome accession   NZ_CP127833
Coordinates   224138..227638 (-) Length   1166 a.a.
NCBI ID   WP_286058759.1    Uniprot ID   -
Organism   Bacillus mojavensis strain KRS009     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context


Location: 219138..232638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS01290 sbcD 219197..220375 (-) 1179 WP_286058757.1 exonuclease subunit SbcD -
  QLQ02_RS01295 addA 220447..224151 (-) 3705 WP_286058758.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  QLQ02_RS01300 addB 224138..227638 (-) 3501 WP_286058759.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  QLQ02_RS01305 - 227824..228237 (+) 414 Protein_259 rubrerythrin family protein -
  QLQ02_RS01310 - 228363..228677 (+) 315 WP_010333659.1 four-helix bundle copper-binding protein -
  QLQ02_RS01315 - 228712..230445 (-) 1734 WP_286058760.1 ABC transporter substrate-binding protein -
  QLQ02_RS01320 - 230561..231762 (+) 1202 Protein_262 MFS transporter -

Sequence


Protein


Download         Length: 1166 a.a.        Molecular weight: 134690.76 Da        Isoelectric Point: 5.5812

>NTDB_id=844415 QLQ02_RS01300 WP_286058759.1 224138..227638(-) (addB) [Bacillus mojavensis strain KRS009]
MGAEFLVGRSGSGKTKLIIDSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPDTGGMIRAQVFSFSRLAWRVLQHTG
GMSRPFLTSTGVQMLLRKLIEEHKQEFKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMADSGTASEYRGERVLSE
KLHDLSILYQQMEKSLEGQYLHSEDYLTLLAEHIPQAEDLKGAHVYVDGFYQFTPQEFRVLEQLMLQAEHITFSLTADKP
SHEGEPQELDLFRMTGKTYYRLHQTAKELNLDITYKELDGLKRHKRVPELAHLEAQYEARPVIPFAEKQEAFTVMQAANR
RAELEGIAREIHSLVREKGYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGKTSMMNHPLVEFIRSSLDVLKGNWRY
EAVFRCVKTELLFPLNEPKAKVREQVDQLENYCIAYGIKGDRWTKGDRFHYRRFVSLDDEFAQTDQEIEMENMLNDTRDW
IVPPLFQLQKRMKKAKTVQEKAEALYRYLEETDVPLKLDQERQRAEEDGRIIEAQQHQQAWDAVIQLLEEFVEMMGEDEI
SLDLFQQMMETGAESLTFSLIPPALDQVFVGNMDLSRIYGTSCTFVVGANDGVLPARPDENGVLSDDDREWLKTIGIELS
SGGRERLLDEHFLIYMALSSPSDRLYVTYPIADAEGKTLLPSIVIKRLEELFPKHRERLLTNEPEQVSDEEQLMYLVNKS
VAQSYTASQLRLWTREYEISDVWWSAYNALMNEPNRLESKKLFSSLFFRNEVKQLERSVSRQLYGERIQGSVSRMETFNA
CPFSHFASHGLHLKERQFFKLEAPDIGQLFHSSLKLISDRLREQKIDWRDLTKEQCELFSYDAVERLAPKLQKEILLSSN
RHYYVKEKLQKIVTRVSGILSEHAKASGFVPIGLELGFGGKGPLPPLTFKLKNGCTMELVGRIDRVDKAESSKGLLLRIV
DYKSSDKGLDLAEVYYGLALQMLTYLDLSITHSLDWLGMKATPAGVLYFHIHDPMIQSNLPLGLDEIEQEIFKKFKMKGL
LLGDHEAIRLMDTTLQEGRSNIINAGLKKDGSLRSDSAAVGEKEFELLTKHVRRTFQEAGEQITDGRVSIEPYKMKNKTP
CTYCAFKSVCQFDESLEENEYRQLKAEKDKTVLDWIKKEADGNEHS

Nucleotide


Download         Length: 3501 bp        

>NTDB_id=844415 QLQ02_RS01300 WP_286058759.1 224138..227638(-) (addB) [Bacillus mojavensis strain KRS009]
TTGGGAGCAGAGTTTTTAGTAGGCAGGTCCGGGAGTGGAAAAACGAAGCTGATCATCGACAGCATTCAAGATGAACTGCG
CCGGGCTCCATTCGGGAAACCGATCATTTTTCTAGTCCCGGATCAAATGACGTTTTTAATGGAATACGAGCTTGCTAAAA
CGCCTGATACGGGCGGCATGATTCGTGCTCAAGTCTTCAGCTTTTCACGACTGGCCTGGCGCGTCCTCCAGCATACGGGA
GGAATGAGCAGGCCGTTTCTTACGAGCACGGGCGTACAGATGCTCCTGCGGAAGCTCATTGAAGAGCACAAACAGGAGTT
TAAAGTCTATCAAAAAGCAAGTGACAAAAGCGGTTTTACCGCACAGGTAGAACGGATGCTGACTGAGTTTAAGAGATACT
GTCTGGAACCGGAAGATATTCGCCGGATGGCGGATAGCGGAACAGCTTCCGAGTATAGAGGGGAACGTGTTTTATCTGAG
AAGCTTCATGATTTATCGATCCTGTACCAGCAGATGGAAAAAAGCCTTGAAGGTCAGTATCTTCATTCTGAGGATTATTT
GACACTATTGGCAGAGCATATCCCGCAGGCGGAAGATTTGAAAGGGGCACATGTCTATGTAGACGGCTTTTATCAGTTTA
CACCGCAGGAATTCAGGGTGTTAGAGCAGCTTATGCTTCAGGCAGAGCATATCACGTTTTCACTCACAGCGGACAAGCCG
TCACATGAGGGGGAGCCGCAGGAACTTGATTTGTTCAGAATGACGGGAAAAACGTATTATCGCCTGCACCAGACGGCAAA
GGAACTGAATCTGGACATCACCTATAAAGAGCTTGATGGATTAAAACGGCACAAGCGCGTACCGGAATTAGCCCATTTGG
AAGCACAGTATGAAGCGCGTCCGGTTATTCCGTTTGCTGAGAAACAAGAGGCTTTTACCGTGATGCAGGCCGCAAACAGA
CGGGCAGAGCTGGAAGGTATTGCCCGGGAAATCCATAGTCTTGTCAGAGAGAAGGGCTACCGTTACAAGGATGTGGCGAT
TTTAGCGCGTCAGCCGGAAGACTACAAGGATATGGTCAAGGAAGTATTTGCAGATTACGAGATTCCTTATTTTATTGACG
GGAAAACGTCTATGATGAACCACCCGTTAGTGGAGTTTATCCGGTCAAGCCTTGACGTATTAAAGGGGAATTGGCGTTAT
GAAGCGGTGTTCCGCTGCGTGAAAACCGAACTGTTATTCCCGCTTAACGAGCCGAAGGCCAAGGTAAGAGAGCAGGTTGA
TCAGCTGGAGAATTACTGTATCGCTTACGGCATCAAAGGCGATCGCTGGACAAAGGGCGACCGTTTCCATTACAGACGTT
TTGTGTCGCTAGATGATGAATTTGCGCAGACCGATCAAGAAATTGAAATGGAAAACATGCTGAATGACACGCGCGATTGG
ATTGTTCCGCCGCTGTTCCAGCTGCAGAAACGAATGAAAAAAGCAAAAACGGTTCAAGAGAAGGCGGAGGCGCTTTACCG
TTATTTAGAAGAGACGGATGTGCCGCTGAAGCTGGATCAGGAAAGACAGCGGGCTGAGGAAGACGGCAGAATCATTGAAG
CACAGCAGCATCAGCAGGCATGGGACGCTGTCATTCAGCTGCTTGAGGAGTTTGTGGAAATGATGGGCGAAGATGAAATT
TCTCTTGATTTGTTTCAGCAGATGATGGAAACCGGTGCAGAGTCGCTGACATTCTCTCTCATTCCTCCGGCGCTTGATCA
GGTGTTTGTCGGCAATATGGATTTGTCCAGAATATACGGTACCTCATGTACTTTTGTGGTTGGGGCAAACGACGGCGTCC
TGCCGGCTCGCCCTGATGAAAATGGCGTGCTGTCGGATGATGATCGTGAGTGGCTGAAGACGATAGGTATTGAGCTTTCC
TCCGGCGGGCGGGAGCGTCTGCTTGATGAGCATTTCCTGATCTATATGGCGCTTTCTAGCCCATCTGACCGCCTTTATGT
GACGTATCCGATTGCTGATGCGGAAGGAAAAACGCTTTTGCCGTCGATTGTCATCAAGCGGCTGGAAGAACTGTTTCCAA
AGCATCGCGAGCGTCTATTGACAAATGAACCGGAGCAGGTCAGCGATGAGGAACAGCTTATGTATCTTGTCAATAAAAGC
GTGGCGCAATCATACACCGCTAGCCAGCTCAGGTTATGGACGAGGGAATATGAGATCAGCGACGTCTGGTGGAGCGCGTA
CAATGCGCTGATGAATGAACCTAACAGGCTGGAGTCGAAAAAGCTTTTCTCAAGCCTGTTTTTCCGCAATGAAGTCAAGC
AGCTTGAACGTTCTGTTTCGAGACAGCTCTATGGTGAACGTATTCAAGGGAGCGTGTCGAGGATGGAAACTTTTAACGCT
TGTCCGTTCTCGCATTTTGCGTCCCACGGGCTGCATCTGAAGGAACGTCAATTTTTCAAGCTTGAAGCGCCGGATATCGG
GCAGCTCTTTCATTCCAGTTTAAAACTGATTTCAGACCGGCTTCGTGAGCAAAAAATAGATTGGCGCGACCTAACGAAGG
AGCAGTGCGAGCTGTTTTCTTATGACGCGGTCGAGCGGCTGGCGCCGAAGCTGCAAAAAGAAATTCTGCTCAGTTCAAAC
CGGCATTATTACGTGAAAGAAAAACTGCAAAAAATTGTGACACGCGTGTCCGGCATTTTAAGCGAGCATGCGAAAGCGAG
CGGATTCGTGCCGATCGGCCTTGAGTTGGGCTTTGGCGGAAAGGGCCCGCTCCCGCCGCTTACCTTTAAGCTGAAAAACG
GCTGTACGATGGAGCTCGTTGGGCGGATTGACCGCGTGGATAAAGCGGAAAGCTCTAAAGGCCTGCTCCTCCGAATTGTC
GATTATAAATCCAGTGATAAAGGCCTTGACTTGGCGGAAGTGTATTACGGACTTGCGCTGCAAATGCTGACGTATCTGGA
TTTATCGATTACACATTCATTAGACTGGCTAGGAATGAAAGCCACGCCGGCCGGGGTGCTGTATTTCCATATTCATGACC
CGATGATACAATCGAATCTTCCGCTTGGACTTGATGAGATTGAACAGGAAATTTTTAAGAAATTTAAGATGAAGGGCCTC
CTCCTCGGTGATCATGAGGCGATTCGCCTCATGGATACAACCCTTCAAGAAGGAAGATCAAATATCATCAATGCGGGCTT
GAAGAAAGACGGCTCTCTCAGATCGGATTCAGCAGCAGTCGGTGAAAAAGAATTTGAGCTGTTGACGAAGCATGTGCGCC
GCACCTTCCAAGAAGCAGGCGAGCAAATCACTGACGGGCGCGTATCCATTGAGCCGTATAAAATGAAGAACAAGACACCT
TGCACATACTGTGCGTTTAAATCAGTATGCCAATTTGATGAATCATTAGAAGAAAACGAGTATCGTCAGTTAAAGGCCGA
AAAGGACAAGACGGTACTTGATTGGATAAAGAAGGAGGCTGATGGCAATGAACATTCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

94.511

100

0.945