Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QRO24_RS10565 Genome accession   NZ_CP127829
Coordinates   2214187..2215389 (-) Length   400 a.a.
NCBI ID   WP_409025713.1    Uniprot ID   -
Organism   Gallibacterium anatis strain OH/Ck/12965/20     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2206868..2214003 2214187..2215389 flank 184


Gene organization within MGE regions


Location: 2206868..2215389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRO24_RS10520 (QRO24_10470) - 2206868..2207472 (+) 605 Protein_2039 IS1595 family transposase -
  QRO24_RS10525 (QRO24_10475) - 2207576..2207863 (-) 288 WP_409025710.1 LysR substrate-binding domain-containing protein -
  QRO24_RS10530 (QRO24_10480) - 2207926..2208900 (+) 975 WP_335799382.1 IS30-like element ISApl1 family transposase -
  QRO24_RS10535 (QRO24_10485) - 2209030..2209389 (+) 360 WP_094933643.1 hypothetical protein -
  QRO24_RS10540 (QRO24_10490) - 2209451..2209972 (+) 522 WP_094933644.1 hypothetical protein -
  QRO24_RS10545 (QRO24_10495) - 2210059..2210544 (-) 486 Protein_2044 LysR family transcriptional regulator -
  QRO24_RS10550 (QRO24_10500) - 2210660..2211523 (+) 864 WP_409025711.1 aldo/keto reductase -
  QRO24_RS10555 (QRO24_10505) - 2211609..2213171 (-) 1563 WP_335796694.1 hypothetical protein -
  QRO24_RS10560 (QRO24_10510) - 2213350..2214003 (+) 654 WP_409025712.1 IS1595 family transposase -
  QRO24_RS10565 (QRO24_10515) dprA 2214187..2215389 (-) 1203 WP_409025713.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 43606.04 Da        Isoelectric Point: 6.8808

>NTDB_id=844379 QRO24_RS10565 WP_409025713.1 2214187..2215389(-) (dprA) [Gallibacterium anatis strain OH/Ck/12965/20]
MQTVTTLLRLALLPQFGAIKIQQLLEQISLDTLLSYDRQTLSQIGWNTAQIQAWFSPPQAIIDTVLNWQQQADNHILHYF
DHSYPFLLKQTRSAPPLLFVKGNIDVLSSPQIAMVGSRYCSPYGEHYAQTIAGELVHSGITINSGLALGIDGICHRAALD
NHGKTVAVLGSGLNQLYPARHKKLAQQILENNGALLSELFPDTPPIAENFPRRNRIISGLSFGTIVIEASQKSGSLITAR
LALEQNREVFAVPGALDNPLSQGCHHLIKQGAWLIENAQDVLEILTPQISSLMPFTPAIAAQTPTPTGNRSTAQNTIAIS
PQAKSGYTPPTINKKAVIKLDIPPQHQALMQQLNSATAISPDELSTALNRPIDQILTDLLELEMLGAVQQIQGGYIKNIV

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=844379 QRO24_RS10565 WP_409025713.1 2214187..2215389(-) (dprA) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGCAAACAGTAACCACACTTTTACGTTTAGCACTGCTGCCACAATTCGGTGCTATCAAAATTCAACAACTGCTTGAACA
AATCTCACTAGATACGCTGCTCAGCTACGATCGACAAACACTCAGCCAAATCGGTTGGAACACTGCGCAAATTCAGGCTT
GGTTTTCACCGCCGCAAGCGATTATCGACACCGTTCTGAATTGGCAACAACAGGCAGACAACCATATTCTGCACTATTTT
GATCACAGTTACCCATTTTTGTTGAAACAAACTCGCTCCGCACCACCATTGCTGTTTGTTAAAGGTAACATTGATGTACT
TTCTTCGCCACAAATCGCTATGGTAGGTAGTCGCTATTGTTCACCTTATGGCGAACATTACGCCCAAACTATTGCCGGCG
AATTGGTACATAGCGGAATTACTATCAACAGCGGTTTAGCCTTAGGCATTGACGGCATTTGTCATCGTGCCGCTTTGGAT
AATCACGGTAAAACCGTTGCCGTTTTGGGCAGTGGATTGAATCAACTCTATCCGGCTCGCCACAAAAAATTGGCACAACA
GATTCTAGAAAACAACGGTGCATTGCTGTCGGAACTGTTCCCCGACACACCTCCCATTGCAGAAAATTTTCCACGTCGCA
ACCGAATTATCAGCGGTCTCTCATTCGGCACCATCGTCATCGAAGCCTCACAAAAAAGCGGTTCATTAATTACTGCACGT
CTGGCATTGGAACAAAATCGCGAAGTATTCGCCGTTCCAGGTGCATTGGACAATCCATTGAGTCAAGGTTGCCATCACTT
AATCAAACAAGGGGCGTGGTTAATTGAAAATGCACAGGATGTGTTGGAAATTCTAACACCGCAAATTTCATCATTAATGC
CGTTTACACCAGCAATAGCAGCGCAAACACCAACGCCAACCGGCAATCGCTCTACTGCACAGAACACGATCGCAATATCG
CCACAAGCAAAATCCGGTTACACGCCGCCGACCATCAACAAAAAAGCGGTGATCAAACTTGATATTCCGCCACAACATCA
AGCATTAATGCAACAATTAAACAGTGCAACTGCGATTTCACCGGATGAACTTTCGACAGCATTAAATCGCCCTATCGATC
AAATTCTTACCGATCTATTGGAACTGGAAATGCTCGGTGCAGTGCAACAGATTCAAGGAGGTTATATTAAAAATATCGTC
TAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-276)

DprA winged helix domain (DprA_WH)

(344-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

49.242

99

0.487
  dprA Haemophilus influenzae Rd KW20

51.351

92.5

0.475
  dprA Vibrio campbellii strain DS40M4

43.622

98

0.427