Detailed information NTG0844265

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QQ348_RS21320
• Genome accession: NZ_CP127505
• Coordinates: 4340259..4341059 (+)
• Length: 266 a.a.
• NCBI ID: WP_087830636.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain PS00272.4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4335259..4346059

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQ348_RS21285 (QQ348_21260)	gspH	4335415..4335930 (+)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-
QQ348_RS21290 (QQ348_21265)	gspI	4335927..4336292 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
QQ348_RS21295 (QQ348_21270)	gspJ	4336289..4336885 (+)	597	WP_032419387.1	type II secretion system minor pseudopilin GspJ	-
QQ348_RS21300 (QQ348_21275)	gspK	4336882..4337868 (+)	987	WP_087830633.1	type II secretion system minor pseudopilin GspK	-
QQ348_RS21305 (QQ348_21280)	gspL	4337855..4339048 (+)	1194	WP_087830634.1	type II secretion system protein GspL	-
QQ348_RS21310 (QQ348_21285)	-	4339041..4339526 (+)	486	WP_004145896.1	type II secretion system protein M	-
QQ348_RS21315 (QQ348_21290)	-	4339516..4340262 (+)	747	WP_087830635.1	type II secretion system protein N	-
QQ348_RS21320 (QQ348_21295)	pilD	4340259..4341059 (+)	801	WP_087830636.1	prepilin peptidase	Machinery gene
QQ348_RS21325 (QQ348_21300)	hrpB	4341107..4343536 (-)	2430	WP_087830637.1	ATP-dependent helicase HrpB	-
QQ348_RS21330 (QQ348_21305)	thpR	4343609..4344145 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
QQ348_RS21335 (QQ348_21310)	sfsA	4344145..4344861 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QQ348_RS21340 (QQ348_21315)	dksA	4345024..4345479 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29437.07 Da
• Isoelectric Point: 8.8894

>NTDB_id=844265 QQ348_RS21320 WP_087830636.1 4340259..4341059(+) (pilD) [Klebsiella pneumoniae strain PS00272.4]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNMPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=844265 QQ348_RS21320 WP_087830636.1 4340259..4341059(+) (pilD) [Klebsiella pneumoniae strain PS00272.4]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATGCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	42.912	98.12	0.421