Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   P9963_RS29930 Genome accession   NZ_CP143649
Coordinates   6399385..6399981 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain CPO506     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6394385..6404981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9963_RS29910 (P9963_029910) aroK 6395516..6396034 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P9963_RS29915 (P9963_029915) pilQ 6396046..6398190 (-) 2145 WP_285239537.1 type 4a pilus secretin PilQ Machinery gene
  P9963_RS29920 (P9963_029920) comL/pilP 6398244..6398768 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P9963_RS29925 (P9963_029925) pilO 6398765..6399388 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  P9963_RS29930 (P9963_029930) pilN 6399385..6399981 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  P9963_RS29935 (P9963_029935) pilM 6399981..6401045 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  P9963_RS29940 (P9963_029940) - 6401230..6403698 (+) 2469 WP_025297613.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=844257 P9963_RS29930 WP_003095839.1 6399385..6399981(-) (pilN) [Pseudomonas aeruginosa strain CPO506]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=844257 P9963_RS29930 WP_003095839.1 6399385..6399981(-) (pilN) [Pseudomonas aeruginosa strain CPO506]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATTGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369