Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   P9963_RS29920 Genome accession   NZ_CP143649
Coordinates   6398244..6398768 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain CPO506     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6393244..6403768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9963_RS29905 (P9963_029905) aroB 6394360..6395466 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  P9963_RS29910 (P9963_029910) aroK 6395516..6396034 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P9963_RS29915 (P9963_029915) pilQ 6396046..6398190 (-) 2145 WP_285239537.1 type 4a pilus secretin PilQ Machinery gene
  P9963_RS29920 (P9963_029920) comL/pilP 6398244..6398768 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P9963_RS29925 (P9963_029925) pilO 6398765..6399388 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  P9963_RS29930 (P9963_029930) pilN 6399385..6399981 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  P9963_RS29935 (P9963_029935) pilM 6399981..6401045 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  P9963_RS29940 (P9963_029940) - 6401230..6403698 (+) 2469 WP_025297613.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=844255 P9963_RS29920 WP_003095836.1 6398244..6398768(-) (comL/pilP) [Pseudomonas aeruginosa strain CPO506]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=844255 P9963_RS29920 WP_003095836.1 6398244..6398768(-) (comL/pilP) [Pseudomonas aeruginosa strain CPO506]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362