Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   P9963_RS26435 Genome accession   NZ_CP143649
Coordinates   5663396..5664268 (+) Length   290 a.a.
NCBI ID   WP_015648060.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CPO506     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5658396..5669268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9963_RS26415 (P9963_026415) - 5658680..5659621 (-) 942 WP_228480041.1 O-antigen ligase family protein -
  P9963_RS26420 (P9963_026420) pilA/pilAI 5659779..5660243 (-) 465 WP_023129290.1 pilin Machinery gene
  P9963_RS26425 (P9963_026425) pilB 5660474..5662174 (+) 1701 WP_030048379.1 type IV-A pilus assembly ATPase PilB Machinery gene
  P9963_RS26430 (P9963_026430) pilC 5662178..5663395 (+) 1218 WP_015648061.1 type II secretion system F family protein Machinery gene
  P9963_RS26435 (P9963_026435) pilD 5663396..5664268 (+) 873 WP_015648060.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  P9963_RS26440 (P9963_026440) coaE 5664265..5664876 (+) 612 WP_003094654.1 dephospho-CoA kinase -
  P9963_RS26445 (P9963_026445) yacG 5664873..5665073 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  P9963_RS26450 (P9963_026450) - 5665110..5665319 (-) 210 WP_003094660.1 hypothetical protein -
  P9963_RS26455 (P9963_026455) - 5665425..5666114 (-) 690 WP_003103868.1 energy-coupling factor ABC transporter permease -
  P9963_RS26460 (P9963_026460) - 5666111..5666581 (-) 471 WP_003103866.1 hypothetical protein -
  P9963_RS26465 (P9963_026465) - 5666578..5667003 (-) 426 WP_003103865.1 GNAT family N-acetyltransferase -
  P9963_RS26470 (P9963_026470) - 5667136..5667765 (+) 630 WP_015648058.1 DUF1780 domain-containing protein -
  P9963_RS26475 (P9963_026475) - 5667762..5668211 (+) 450 WP_003094670.1 MOSC domain-containing protein -
  P9963_RS26480 (P9963_026480) - 5668237..5668407 (+) 171 WP_003094672.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31889.86 Da        Isoelectric Point: 7.3454

>NTDB_id=844244 P9963_RS26435 WP_015648060.1 5663396..5664268(+) (pilD) [Pseudomonas aeruginosa strain CPO506]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGNCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide


Download         Length: 873 bp        

>NTDB_id=844244 P9963_RS26435 WP_015648060.1 5663396..5664268(+) (pilD) [Pseudomonas aeruginosa strain CPO506]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAACTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(137-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55

96.552

0.531
  pilD Vibrio campbellii strain DS40M4

51.943

97.586

0.507
  pilD Acinetobacter nosocomialis M2

50.177

97.586

0.49
  pilD Acinetobacter baumannii D1279779

50.177

97.586

0.49
  pilD Neisseria gonorrhoeae MS11

48.201

95.862

0.462