Detailed information NTG0844176

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QQA13_RS12765
• Genome accession: NZ_CP127409
• Coordinates: 2752872..2754260 (+)
• Length: 462 a.a.
• NCBI ID: WP_108470913.1
• Uniprot ID: -
• Organism: Rhodanobacter thiooxydans strain C33
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2747872..2759260

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQA13_RS12755	-	2749163..2750431 (+)	1269	WP_234411279.1	MFS transporter	-
QQA13_RS12760	-	2750451..2752697 (+)	2247	WP_108470912.1	glycosyl hydrolase family 65 protein	-
QQA13_RS12765	pilR	2752872..2754260 (+)	1389	WP_108470913.1	sigma-54 dependent transcriptional regulator	Regulator
QQA13_RS12770	-	2754339..2755604 (-)	1266	WP_108470914.1	FtsX-like permease family protein	-
QQA13_RS12775	-	2755601..2756926 (-)	1326	WP_108470915.1	FtsX-like permease family protein	-
QQA13_RS12780	-	2756966..2758504 (-)	1539	WP_108470916.1	response regulator	-
QQA13_RS12785	-	2758608..2759054 (-)	447	WP_108470917.1	response regulator	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 50008.20 Da
• Isoelectric Point: 6.0375

>NTDB_id=844176 QQA13_RS12765 WP_108470913.1 2752872..2754260(+) (pilR) [Rhodanobacter thiooxydans strain C33]
MNPQTVLVIDDERDIRELLTITLGRMDLQVDAVGTVAEARRALAERSYDLCFTDMRLPDGSGHEIIELISAEHPDMPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRGLVRTALRLAEERRNGAAAAKTGDSGDRLIGDSAAMQQVRATIGKLAR
NQAPVYIAGESGVGKELVARLIHEQGPRASGPFVPVNCGAIPSELMESEFFGHRKGSFTGASADKEGLFQAAQGGTLFLD
EVAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDVRILSATHKNLGQLVEQGQFRQDLFYRINVIELRVPPLRERRGDVP
QLSTFILKALAGKSGESVGQLSPSARDALDAYEFPGNVRELENILERAMAMCDGSTIEAADLMLPQRSARSPQEATIPGQ
PPAPVAAPASANGGLDDYISNLERTAIVKALEESRYNKTAAARKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1389 bp

>NTDB_id=844176 QQA13_RS12765 WP_108470913.1 2752872..2754260(+) (pilR) [Rhodanobacter thiooxydans strain C33]
ATGAATCCCCAGACCGTTTTGGTCATCGACGACGAACGCGACATCCGCGAACTGCTGACCATCACGCTGGGGCGAATGGA
CCTGCAGGTCGACGCCGTCGGCACCGTCGCCGAGGCACGCCGCGCACTGGCCGAACGCAGTTATGACCTTTGCTTCACCG
ACATGCGGCTGCCCGACGGCAGCGGCCACGAGATCATCGAGCTGATCTCCGCGGAACACCCCGACATGCCGGTGGCGATG
ATCACCGCCTACGGCAACGTCGACGCCGCGGTGAACGCGCTGAAGGCCGGCGCGTTCGACTTCGTCTCCAAGCCCGTCGA
CATCCAGATGCTGCGCGGGCTGGTACGCACCGCCCTGCGCCTGGCCGAGGAGAGGCGCAACGGCGCCGCCGCGGCGAAAA
CCGGCGACTCCGGCGACCGCCTGATCGGCGACTCCGCGGCGATGCAACAGGTGCGCGCCACCATCGGCAAACTGGCGCGC
AACCAGGCGCCGGTCTACATCGCCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCGCGGCTGATCCACGAGCAGGGCCC
ACGCGCCAGCGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGCCACC
GCAAGGGCAGCTTCACCGGCGCCAGCGCGGACAAGGAAGGCCTGTTCCAGGCCGCCCAGGGCGGCACCCTGTTCCTCGAC
GAGGTGGCCGAGCTGCCGCTGCACATGCAGGTGAAATTGCTGCGTGCAATCCAGGAAAAGGCGGTGCGCCCGATCGGCGG
CCGCGACGAGATCCCGGTCGACGTGCGCATCCTGTCGGCCACCCACAAGAACCTCGGCCAGCTGGTCGAGCAGGGGCAGT
TCCGCCAGGACCTGTTCTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGGCGACGTGCCG
CAGCTGTCCACTTTCATCCTCAAGGCGCTGGCCGGCAAGAGCGGCGAAAGCGTCGGCCAGCTATCGCCGTCCGCCCGCGA
CGCACTGGACGCGTATGAGTTTCCCGGCAACGTGCGCGAGCTGGAGAACATCCTCGAACGCGCGATGGCCATGTGCGACG
GCAGCACCATCGAGGCGGCCGACCTGATGCTGCCGCAGCGCAGCGCGCGGTCGCCCCAGGAAGCGACGATACCGGGCCAG
CCACCGGCGCCGGTCGCGGCGCCCGCCAGCGCGAACGGCGGCCTCGACGACTACATCAGCAACCTCGAGCGCACCGCGAT
CGTCAAGGCGCTGGAAGAATCGCGCTACAACAAGACCGCCGCCGCGCGCAAACTCGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTGAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-114)

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

• Bacterial regulatory protein, Fis family (HTH_8) (420-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.688	100	0.617
pilR	Acinetobacter baumannii strain A118	47.835	100	0.478