Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DBT50_RS00080 | Genome accession | NZ_CP127382 |
| Coordinates | 18784..19356 (+) | Length | 190 a.a. |
| NCBI ID | WP_060779015.1 | Uniprot ID | A0A0X8FFW9 |
| Organism | Aerococcus tenax strain UMB3669 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1442..44348 | 18784..19356 | within | 0 |
Gene organization within MGE regions
Location: 1442..44348
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBT50_RS00010 (DBT50_0000010) | dnaN | 1602..2753 (+) | 1152 | WP_064292854.1 | DNA polymerase III subunit beta | - |
| DBT50_RS00015 (DBT50_0000015) | - | 3007..4341 (+) | 1335 | WP_111852463.1 | FAD-binding oxidoreductase | - |
| DBT50_RS00020 (DBT50_0000020) | yaaA | 4686..4949 (+) | 264 | WP_111852464.1 | S4 domain-containing protein YaaA | - |
| DBT50_RS00025 (DBT50_0000025) | recF | 4939..6057 (+) | 1119 | WP_111852465.1 | DNA replication/repair protein RecF | - |
| DBT50_RS00030 (DBT50_0000030) | gyrB | 6068..8050 (+) | 1983 | WP_111853453.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| DBT50_RS00035 (DBT50_0000035) | gyrA | 8070..10730 (+) | 2661 | WP_111852467.1 | DNA gyrase subunit A | - |
| DBT50_RS00040 (DBT50_0000040) | - | 11126..12031 (+) | 906 | WP_111852468.1 | ABC transporter ATP-binding protein | - |
| DBT50_RS00045 (DBT50_0000045) | - | 12024..13328 (+) | 1305 | WP_111852469.1 | ABC transporter permease | - |
| DBT50_RS00050 (DBT50_0000050) | - | 13458..13946 (+) | 489 | WP_181566127.1 | GNAT family N-acetyltransferase | - |
| DBT50_RS00060 (DBT50_0000060) | - | 14378..15367 (-) | 990 | WP_111853455.1 | asparaginase | - |
| DBT50_RS00065 (DBT50_0000065) | - | 15410..16828 (-) | 1419 | WP_111853456.1 | YfcC family protein | - |
| DBT50_RS00070 (DBT50_09935) | - | 16821..18122 (-) | 1302 | WP_111852473.1 | amidohydrolase | - |
| DBT50_RS00075 (DBT50_0000080) | rpsF | 18446..18748 (+) | 303 | WP_013669618.1 | 30S ribosomal protein S6 | - |
| DBT50_RS00080 (DBT50_0000085) | ssb | 18784..19356 (+) | 573 | WP_060779015.1 | single-stranded DNA-binding protein | Machinery gene |
| DBT50_RS00085 (DBT50_0000090) | rpsR | 19384..19623 (+) | 240 | WP_013669454.1 | 30S ribosomal protein S18 | - |
| DBT50_RS00090 (DBT50_0000095) | - | 19844..20053 (+) | 210 | WP_111852474.1 | helix-turn-helix transcriptional regulator | - |
| DBT50_RS00095 (DBT50_0000100) | - | 20037..20555 (+) | 519 | WP_181566128.1 | DUF3278 domain-containing protein | - |
| DBT50_RS00100 (DBT50_0000105) | - | 23234..25264 (+) | 2031 | WP_111852476.1 | DHH family phosphoesterase | - |
| DBT50_RS00105 (DBT50_0000110) | - | 25382..26092 (+) | 711 | WP_111852477.1 | ATP-binding cassette domain-containing protein | - |
| DBT50_RS00110 (DBT50_0000115) | - | 26094..26867 (+) | 774 | WP_224785074.1 | ABC transporter permease | - |
| DBT50_RS00115 (DBT50_0000120) | - | 26881..27660 (+) | 780 | WP_111852479.1 | ABC transporter permease | - |
| DBT50_RS00120 (DBT50_0000125) | rplI | 27794..28246 (+) | 453 | WP_111852480.1 | 50S ribosomal protein L9 | - |
| DBT50_RS00125 (DBT50_0000130) | dnaB | 28396..29769 (+) | 1374 | WP_111852481.1 | replicative DNA helicase | - |
| DBT50_RS00135 (DBT50_0000140) | - | 30403..30675 (-) | 273 | WP_111852482.1 | type II toxin-antitoxin system YafQ family toxin | - |
| DBT50_RS00140 (DBT50_0000145) | - | 30668..30919 (-) | 252 | WP_060778044.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| DBT50_RS00145 (DBT50_0000150) | - | 31108..31287 (-) | 180 | WP_111852484.1 | histidine kinase | - |
| DBT50_RS00150 (DBT50_0000155) | - | 31305..31472 (-) | 168 | WP_111852485.1 | histidine kinase | - |
| DBT50_RS00155 (DBT50_0000160) | - | 31489..31668 (-) | 180 | WP_111852486.1 | histidine kinase | - |
| DBT50_RS00160 (DBT50_0000165) | - | 31698..31958 (-) | 261 | WP_111853457.1 | hypothetical protein | - |
| DBT50_RS00165 (DBT50_0000170) | fucO | 32730..33881 (+) | 1152 | WP_111852488.1 | lactaldehyde reductase | - |
| DBT50_RS00170 (DBT50_0000175) | - | 34261..34692 (-) | 432 | WP_111852489.1 | YrhK family protein | - |
| DBT50_RS00175 (DBT50_0000180) | trpB | 35207..36388 (-) | 1182 | WP_111852490.1 | tryptophan synthase subunit beta | - |
| DBT50_RS00180 (DBT50_0000185) | - | 36737..37939 (-) | 1203 | WP_111852491.1 | argininosuccinate synthase | - |
| DBT50_RS00185 (DBT50_0000190) | - | 38344..38892 (-) | 549 | WP_111852492.1 | cysteine hydrolase family protein | - |
| DBT50_RS00190 (DBT50_0000195) | - | 39081..40028 (+) | 948 | WP_111852493.1 | DNA/RNA non-specific endonuclease | - |
| DBT50_RS00195 (DBT50_0000200) | - | 40059..40754 (-) | 696 | WP_181566129.1 | YoaK family protein | - |
| DBT50_RS00200 (DBT50_0000205) | - | 40919..41632 (+) | 714 | WP_111852495.1 | glycosyltransferase family 2 protein | - |
| DBT50_RS00205 (DBT50_09940) | - | 42224..43030 (+) | 807 | WP_111852496.1 | threonine/serine exporter ThrE family protein | - |
| DBT50_RS00210 (DBT50_09945) | - | 43023..43499 (+) | 477 | WP_060777500.1 | threonine/serine exporter family protein | - |
Sequence
Protein
Download Length: 190 a.a. Molecular weight: 20886.50 Da Isoelectric Point: 4.2964
>NTDB_id=843870 DBT50_RS00080 WP_060779015.1 18784..19356(+) (ssb) [Aerococcus tenax strain UMB3669]
MINNVVLVGRLTREVDLRYTQSGTAVANFTVACDRNYRNAQGETQTDFINCVMWRKAAENFAKFTRKGSLVGIEGNIQTR
NYENQQGQRVYVTEVLANNFSLLEPKSVTEQRPQASDNGNNFANPGNNFANDSFGSNQSFGGYNNQQDSPSMNDNSFGGS
NDPFAGGNNNPFPSNDNDGSINIADDDLPF
MINNVVLVGRLTREVDLRYTQSGTAVANFTVACDRNYRNAQGETQTDFINCVMWRKAAENFAKFTRKGSLVGIEGNIQTR
NYENQQGQRVYVTEVLANNFSLLEPKSVTEQRPQASDNGNNFANPGNNFANDSFGSNQSFGGYNNQQDSPSMNDNSFGGS
NDPFAGGNNNPFPSNDNDGSINIADDDLPF
Nucleotide
Download Length: 573 bp
>NTDB_id=843870 DBT50_RS00080 WP_060779015.1 18784..19356(+) (ssb) [Aerococcus tenax strain UMB3669]
ATGATTAATAATGTCGTCTTAGTCGGCCGATTAACTCGGGAAGTTGATCTACGTTATACCCAAAGTGGAACTGCAGTAGC
CAACTTTACTGTAGCTTGTGACCGTAACTACCGCAATGCCCAAGGTGAAACTCAAACGGATTTCATCAATTGTGTGATGT
GGCGTAAAGCTGCTGAAAACTTTGCTAAATTTACACGAAAAGGTTCTTTGGTAGGGATTGAAGGCAATATTCAAACCCGT
AACTACGAAAACCAACAAGGCCAACGTGTTTATGTGACCGAAGTCTTAGCGAATAACTTTAGCTTACTGGAACCTAAGAG
TGTCACTGAACAACGCCCACAAGCCAGTGACAATGGCAATAACTTTGCCAACCCAGGCAATAATTTTGCTAATGACTCTT
TTGGCTCTAATCAAAGCTTTGGCGGCTATAATAATCAACAAGATTCCCCTTCAATGAATGATAACAGCTTTGGTGGATCC
AATGACCCATTTGCTGGTGGAAACAATAATCCTTTCCCATCAAATGATAATGACGGATCGATCAATATCGCTGATGATGA
TCTTCCATTCTAG
ATGATTAATAATGTCGTCTTAGTCGGCCGATTAACTCGGGAAGTTGATCTACGTTATACCCAAAGTGGAACTGCAGTAGC
CAACTTTACTGTAGCTTGTGACCGTAACTACCGCAATGCCCAAGGTGAAACTCAAACGGATTTCATCAATTGTGTGATGT
GGCGTAAAGCTGCTGAAAACTTTGCTAAATTTACACGAAAAGGTTCTTTGGTAGGGATTGAAGGCAATATTCAAACCCGT
AACTACGAAAACCAACAAGGCCAACGTGTTTATGTGACCGAAGTCTTAGCGAATAACTTTAGCTTACTGGAACCTAAGAG
TGTCACTGAACAACGCCCACAAGCCAGTGACAATGGCAATAACTTTGCCAACCCAGGCAATAATTTTGCTAATGACTCTT
TTGGCTCTAATCAAAGCTTTGGCGGCTATAATAATCAACAAGATTCCCCTTCAATGAATGATAACAGCTTTGGTGGATCC
AATGACCCATTTGCTGGTGGAAACAATAATCCTTTCCCATCAAATGATAATGACGGATCGATCAATATCGCTGATGATGA
TCTTCCATTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.368 |
100 |
0.542 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.187 |
100 |
0.489 |