Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QRY57_RS20965 Genome accession   NZ_CP127376
Coordinates   3746029..3747072 (-) Length   347 a.a.
NCBI ID   WP_208018181.1    Uniprot ID   -
Organism   Bacillus arachidis strain YX15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3741029..3752072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY57_RS20920 (QRY57_20925) - 3741429..3742061 (+) 633 WP_026589950.1 VC0807 family protein -
  QRY57_RS20925 (QRY57_20930) - 3742228..3742428 (-) 201 WP_026589949.1 YqzE family protein -
  QRY57_RS20930 (QRY57_20935) - 3742464..3742961 (-) 498 WP_286016013.1 shikimate kinase -
  QRY57_RS20935 (QRY57_20940) comGG 3743118..3743504 (-) 387 WP_208018185.1 competence type IV pilus minor pilin ComGG -
  QRY57_RS20940 (QRY57_20945) comGF 3743501..3743962 (-) 462 WP_286016014.1 competence type IV pilus minor pilin ComGF -
  QRY57_RS20945 (QRY57_20950) comGE 3743949..3744308 (-) 360 WP_231503886.1 competence type IV pilus minor pilin ComGE -
  QRY57_RS20950 (QRY57_20955) comGD 3744247..3744690 (-) 444 Protein_3753 competence type IV pilus minor pilin ComGD -
  QRY57_RS20955 (QRY57_20960) comGC 3744687..3744989 (-) 303 WP_026589944.1 competence type IV pilus major pilin ComGC -
  QRY57_RS20960 (QRY57_20965) comGB 3745002..3746042 (-) 1041 WP_286016015.1 competence type IV pilus assembly protein ComGB -
  QRY57_RS20965 (QRY57_20970) comGA 3746029..3747072 (-) 1044 WP_208018181.1 competence type IV pilus ATPase ComGA Machinery gene
  QRY57_RS20970 (QRY57_20975) - 3747277..3747972 (+) 696 WP_286016016.1 helix-turn-helix domain-containing protein -
  QRY57_RS20975 (QRY57_20980) - 3748112..3748354 (+) 243 WP_026589940.1 DUF2626 domain-containing protein -
  QRY57_RS20980 (QRY57_20985) - 3748442..3749857 (+) 1416 WP_026589939.1 L-cystine transporter -
  QRY57_RS20985 (QRY57_20990) - 3750205..3750420 (-) 216 WP_026589938.1 DUF3912 family protein -
  QRY57_RS20990 (QRY57_20995) - 3750672..3750983 (+) 312 WP_026589937.1 hypothetical protein -
  QRY57_RS20995 (QRY57_21000) - 3751022..3751513 (-) 492 WP_286016017.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38950.29 Da        Isoelectric Point: 8.9395

>NTDB_id=843793 QRY57_RS20965 WP_208018181.1 3746029..3747072(-) (comGA) [Bacillus arachidis strain YX15]
MNGVEHFANTIMKEACALQASDLHIVPRQEDAVIQLRIGKDLVTKRCIRKEFGERLVSHFKFLASMDIGERRKPQNGSLY
LQIDGQEVHLRLSTLPTMNLESLVIRLHLQASIQPLSHLSLFPSSAKTLLSFLHHSHGLLVFTGPTGSGKTTTMYALLEV
AKKGQTRRIVTLEDPIEKRKDGLLQIQINEKAGITYTTGLKAILRHDPDIILVGEIRDEETAKVAVRASLTGHLVMTTLH
TNDAKGAVLRLMDYGITRQEIEQSLLAVAAQRLVELKCPFCKGKCSPLCKAMRQVRQASIYELLYGHELKQAIREANGER
VTYHYETLQSCIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=843793 QRY57_RS20965 WP_208018181.1 3746029..3747072(-) (comGA) [Bacillus arachidis strain YX15]
ATGAATGGTGTTGAACATTTTGCCAATACAATTATGAAGGAAGCATGTGCATTACAGGCATCTGATTTACATATTGTGCC
GCGGCAAGAAGATGCAGTCATACAATTGCGTATTGGAAAAGATTTGGTAACGAAGCGTTGTATTAGAAAAGAATTTGGGG
AAAGACTTGTTTCACATTTTAAATTTTTAGCGTCTATGGATATAGGGGAAAGACGTAAGCCACAAAATGGATCATTGTAT
TTACAAATTGATGGACAAGAAGTTCACCTGCGTCTCTCTACACTGCCAACTATGAATTTAGAAAGTCTCGTTATTCGTTT
GCATTTGCAAGCATCGATTCAACCACTTTCCCATCTCTCTTTATTTCCAAGTTCGGCAAAAACACTTCTCTCTTTTTTAC
ATCATTCTCATGGATTACTCGTGTTTACTGGTCCGACAGGATCTGGAAAAACGACGACAATGTATGCTTTGCTAGAGGTA
GCGAAAAAGGGACAAACGCGGCGTATTGTTACACTTGAGGATCCAATCGAAAAGCGAAAGGATGGTTTATTACAAATTCA
AATTAATGAAAAGGCCGGTATCACATATACAACAGGTTTAAAAGCGATTCTGCGCCATGATCCTGATATTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCAAAAGTAGCTGTGCGTGCGAGTTTAACAGGTCATTTAGTAATGACAACGTTGCAT
ACAAACGATGCAAAAGGGGCTGTGCTACGTTTGATGGATTATGGGATTACGAGGCAAGAAATTGAACAATCATTGCTTGC
GGTGGCAGCGCAGCGTCTTGTGGAATTGAAGTGTCCATTTTGCAAAGGAAAATGTTCGCCATTATGTAAAGCGATGAGGC
AGGTACGGCAAGCTAGTATTTACGAGTTGTTATATGGCCATGAATTGAAACAGGCTATTCGTGAAGCAAATGGAGAGCGT
GTAACTTATCATTATGAAACATTGCAATCATGTATAAGAAAAGGATATGCCCTAGGTTTTTTAGAAGAGGATGTTTATGT
TTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

59.078

100

0.591
  pilB Haemophilus influenzae 86-028NP

38.82

92.795

0.36