Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QRY57_RS20660 Genome accession   NZ_CP127376
Coordinates   3698974..3700713 (-) Length   579 a.a.
NCBI ID   WP_286015995.1    Uniprot ID   -
Organism   Bacillus arachidis strain YX15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3693974..3705713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY57_RS20635 (QRY57_20640) - 3694947..3695180 (+) 234 WP_026589999.1 DUF2627 domain-containing protein -
  QRY57_RS20640 (QRY57_20645) - 3695219..3695947 (-) 729 WP_286015993.1 glycerophosphodiester phosphodiesterase -
  QRY57_RS20645 (QRY57_20650) - 3695998..3696144 (+) 147 WP_286015994.1 YycC family protein -
  QRY57_RS20650 (QRY57_20655) spo0A 3696467..3697261 (-) 795 WP_026589997.1 sporulation transcription factor Spo0A Regulator
  QRY57_RS20655 (QRY57_20660) spoIVB 3697555..3698856 (-) 1302 WP_026589996.1 SpoIVB peptidase -
  QRY57_RS20660 (QRY57_20665) recN 3698974..3700713 (-) 1740 WP_286015995.1 DNA repair protein RecN Machinery gene
  QRY57_RS20665 (QRY57_20670) argR 3700977..3701426 (-) 450 WP_017150893.1 arginine repressor ArgR -
  QRY57_RS20670 (QRY57_20675) - 3701569..3702408 (-) 840 WP_208018206.1 TlyA family RNA methyltransferase -
  QRY57_RS20675 (QRY57_20680) dxs 3702412..3704304 (-) 1893 WP_026589993.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QRY57_RS20680 (QRY57_20685) - 3704670..3705563 (-) 894 WP_286015996.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65787.88 Da        Isoelectric Point: 4.9299

>NTDB_id=843792 QRY57_RS20660 WP_286015995.1 3698974..3700713(-) (recN) [Bacillus arachidis strain YX15]
MLSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYIEDDKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVNQL
EIYQGVYAEYEQLKRHLKSLTENEQQMAHRLDLIQFQHEEIRKADLKVDEEHELTEERLKISNFEKIYKALGDAYRSLSE
DGGGLDHVRNAMGQMESITHLDEAYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDIHIETTKKKLKEVENVVLKEATMLSDMRHQLADHLTNAIHQELKELYMEKTKFEVRIA
KREGSIDDPLVDGIPVKCTMDGYDHVEFYISTNPGEPLKQLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVAVLSTEDKVTEIARMISGVEITDLTTEH
AKELLMQAHRFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=843792 QRY57_RS20660 WP_286015995.1 3698974..3700713(-) (recN) [Bacillus arachidis strain YX15]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGTCATTAAATATTTCTTTTCAAAAAGGTTTAACAGTTTT
GAGTGGTGAAACAGGTGCCGGTAAATCAATTATTATTGATGCAATTAGCTTACTTGTTGGTGGCCGTGGTTCAGCAGAGT
TTGTTAGGTACGGAACAGAGAAAGCTGAAATCGAAGGTTTATTTTATATAGAGGATGACAAGCATCCATGTATTGCGAAA
GCTGAAGAGCTAGATATTGAAATTGAAGATGGAATGATCATTTTAAAACGGGATATTGCTGCGAACGGGAAAAGTGTATG
TCGTGTAAATGGTAAGCTTGTTACATTGAGTATATTAAAAGAGATTGGGAAAACACTTGTCGATATTCATGGACAACATG
AAACACAAGATTTGATGAATGAGGAACGTCATTTGTTTATGCTCGATCATTTTGATGGGGATCGTATCGTGAACCAATTA
GAAATATATCAAGGTGTATACGCTGAGTATGAGCAGTTGAAGAGGCATCTCAAATCTCTAACAGAGAATGAACAACAGAT
GGCACATCGATTAGATTTAATTCAATTCCAGCATGAAGAAATTCGTAAAGCAGATTTGAAGGTTGATGAAGAACATGAAT
TGACGGAAGAGAGATTAAAAATCTCCAATTTCGAAAAAATTTATAAAGCGCTTGGTGATGCATACCGTTCATTAAGTGAA
GATGGCGGTGGGCTCGATCATGTACGAAATGCAATGGGACAAATGGAAAGTATTACACACCTAGATGAGGCATATCAAGA
GAATCATGATTCGATTGCTAATAGTTATTACTTGTTAGAAGAGGTTGCCTATCAGCTTCGGGAAAAGTTAGATATGATGG
AATATGATCCGAATCGCTTAGATGAAATTGAAACACGTTTAAATGAAATTCGTATGTTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTGGCGTATGCTGATAAAATAGAACAAGAAATTTTTACAATTGAAAATAAAGATATACATATTGAAAC
GACGAAAAAGAAATTAAAAGAAGTAGAAAATGTAGTTTTAAAGGAAGCAACGATGTTGAGTGATATGCGTCATCAGCTGG
CAGATCACCTTACGAACGCAATCCACCAAGAATTAAAAGAACTCTATATGGAAAAAACGAAATTTGAAGTGAGGATTGCG
AAAAGGGAAGGAAGTATTGATGATCCGCTTGTAGACGGGATACCAGTGAAATGTACGATGGATGGATATGATCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAACCATTAAAACAACTTTCAAAAGTAGCTTCTGGTGGAGAATTATCCCGTATTA
TTTTAGCTTTGAAAAGTATTTTTTCTAAGCACCAAGGTGTTGCATCTGTCATTTTTGATGAAGTAGATACGGGAGTGAGT
GGCCGGGTAGCACAAGCGATCGCGGAAAAAATTTATCGTGTATCTGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCATCGATGGCGGATTCACATTTATTTATCCGTAAACAAGTTGCAAATGATCGGACGATTACATCAGTTGCTG
TATTAAGTACAGAGGATAAGGTAACGGAGATCGCTCGAATGATTTCTGGCGTGGAAATTACCGATTTAACGACGGAACAT
GCTAAAGAGTTACTTATGCAAGCACATCGTTTTAAACAGACAGCAGAGGCTATCCAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.758

100

0.598