Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QRY57_RS02170 Genome accession   NZ_CP127376
Coordinates   98949..100325 (+) Length   458 a.a.
NCBI ID   WP_026593145.1    Uniprot ID   -
Organism   Bacillus arachidis strain YX15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 93949..105325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY57_RS02150 (QRY57_02155) - 94169..94630 (+) 462 WP_286016582.1 CtsR family transcriptional regulator -
  QRY57_RS02155 (QRY57_02160) - 94778..95326 (+) 549 WP_026593142.1 UvrB/UvrC motif-containing protein -
  QRY57_RS02160 (QRY57_02165) - 95331..96395 (+) 1065 WP_286016583.1 protein arginine kinase -
  QRY57_RS02165 (QRY57_02170) clpC 96418..98853 (+) 2436 WP_286016584.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  QRY57_RS02170 (QRY57_02175) radA 98949..100325 (+) 1377 WP_026593145.1 DNA repair protein RadA Machinery gene
  QRY57_RS02175 (QRY57_02180) disA 100329..101405 (+) 1077 WP_026593146.1 DNA integrity scanning diadenylate cyclase DisA -
  QRY57_RS02180 (QRY57_02185) - 101566..102684 (+) 1119 WP_090694445.1 PIN/TRAM domain-containing protein -
  QRY57_RS02185 (QRY57_02190) ispD 102701..103384 (+) 684 WP_208019191.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QRY57_RS02190 (QRY57_02195) ispF 103491..103967 (+) 477 WP_286016585.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49956.56 Da        Isoelectric Point: 7.0899

>NTDB_id=843766 QRY57_RS02170 WP_026593145.1 98949..100325(+) (radA) [Bacillus arachidis strain YX15]
MAKKKTKFICQECGYQSPKYMGKCPGCGQWNTLVEEMEQVVSSRRINYANAIQTEVTKPRRLTEVETKSEARIETKFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADSAYDVLYISGEESAKQIKLRADRLHVNGNNLFVVSETDLQRIA
AHIDEMNPSFVVIDSIQTIYLPEVTSAPGSVSQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRAGLLLQNQDAYLKVAGGLRLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFQRAIIPRKNLGGWTIPDGIEVVGVSNLGEALRLTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=843766 QRY57_RS02170 WP_026593145.1 98949..100325(+) (radA) [Bacillus arachidis strain YX15]
ATGGCTAAAAAGAAAACGAAATTTATATGTCAAGAATGTGGTTATCAGTCACCAAAATATATGGGGAAGTGTCCTGGATG
TGGGCAATGGAATACGCTTGTTGAAGAGATGGAACAAGTTGTATCCTCCCGTCGTATCAACTATGCAAATGCGATTCAAA
CGGAAGTAACGAAGCCAAGGCGTCTTACAGAGGTAGAAACAAAGTCAGAGGCACGAATTGAAACGAAATTTCAAGAATTT
AATCGTGTGCTCGGTGGAGGAATTGTTGATGGTTCTCTCGTACTTATTGGAGGAGACCCTGGAATTGGGAAATCAACTTT
ATTACTACAAATATCATCGCAATTAGCAGATTCTGCGTATGATGTATTGTATATATCTGGTGAAGAATCAGCAAAACAAA
TTAAACTTCGTGCAGACCGTCTACATGTAAATGGAAATAACTTATTTGTTGTTTCAGAAACAGATTTACAGAGAATTGCA
GCACATATCGACGAAATGAATCCTTCCTTTGTTGTCATTGATTCCATTCAAACTATTTATTTACCAGAAGTAACTTCAGC
GCCAGGAAGTGTTTCACAAGTACGTGAATGTACAGCAGAACTGATGAAACTTGCAAAAACGAAAGGAATCCCGATTTTTA
TCGTAGGACATGTGACCAAAGAAGGCGCAATTGCAGGACCACGTATGTTAGAACATATGGTGGATGCGGTTCTTTATTTT
GAAGGAGACCGTCATCACACATATCGTATATTGCGGGCGGTTAAAAATCGTTTTGGTTCTACAAATGAGATGGGTATATT
TGAAATGAAGGAATTAGGTCTTGCAGAAGTATTAAATCCTTCAGAAATTTTTCTAGAAGAAAGACCAGTTGGAGTCGCTG
GTTCTACAGTTGTTGCTTCCATGGAAGGGACAAGGCCAGTTTTAGTAGAAATACAAGCATTAATTTCTCCTACTAGTTTT
GGAAATCCAAGAAGAATGGCTACAGGGATTGATCATAATCGTGTATCGCTTATTATGGCGGTACTAGAAAAAAGAGCAGG
TTTATTATTACAAAACCAAGATGCGTATTTAAAGGTTGCTGGAGGGTTAAGATTGGATGAACCAGCAATTGATTTGGCGG
TCGCTTTAAGTATTGCATCGAGTTTTCGAGATAAGTCAACTGCACCAACCGATGCGGTAATAGGAGAAGTTGGATTAACT
GGCGAAATAAGAAGGGTATCGAGAATTGAACAACGAGTACAAGAAGCGGCTAAACTAGGGTTTCAACGTGCCATTATCCC
ACGAAAAAATTTAGGGGGTTGGACAATTCCGGATGGGATTGAAGTAGTTGGTGTTTCTAATTTAGGAGAGGCGCTTCGTT
TGACATTAGGAGGCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.599

100

0.758
  radA Streptococcus pneumoniae Rx1

63.576

98.908

0.629
  radA Streptococcus pneumoniae D39

63.576

98.908

0.629
  radA Streptococcus pneumoniae R6

63.576

98.908

0.629
  radA Streptococcus pneumoniae TIGR4

63.576

98.908

0.629
  radA Streptococcus mitis SK321

63.576

98.908

0.629
  radA Streptococcus mitis NCTC 12261

63.355

98.908

0.627