Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QRA12_RS11325 Genome accession   NZ_CP127345
Coordinates   2325723..2326169 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2320723..2331169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA12_RS11295 (QRA12_11285) gcvPA 2321649..2322995 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QRA12_RS11300 (QRA12_11290) gcvT 2323015..2324106 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QRA12_RS11305 (QRA12_11295) - 2324265..2324789 (-) 525 WP_001015119.1 shikimate kinase -
  QRA12_RS11310 (QRA12_11300) - 2324779..2324925 (-) 147 WP_001789879.1 hypothetical protein -
  QRA12_RS11315 (QRA12_11305) comGF 2325022..2325519 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  QRA12_RS11320 (QRA12_11310) comGE 2325437..2325736 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QRA12_RS11325 (QRA12_11315) comGD 2325723..2326169 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QRA12_RS11330 (QRA12_11320) comGC 2326147..2326458 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QRA12_RS11335 (QRA12_11325) comGB 2326472..2327542 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QRA12_RS11340 (QRA12_11330) comGA 2327514..2328488 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QRA12_RS11345 (QRA12_11335) - 2328540..2329163 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QRA12_RS11350 (QRA12_11340) - 2329160..2329489 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QRA12_RS11355 (QRA12_11345) - 2329489..2330475 (-) 987 WP_000161314.1 ROK family glucokinase -
  QRA12_RS11360 (QRA12_11350) - 2330472..2330675 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=843650 QRA12_RS11325 WP_001788899.1 2325723..2326169(-) (comGD) [Staphylococcus aureus strain MRSA11]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=843650 QRA12_RS11325 WP_001788899.1 2325723..2326169(-) (comGD) [Staphylococcus aureus strain MRSA11]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1