Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   V1232_RS22965 Genome accession   NZ_CP143357
Coordinates   4909155..4909484 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2023CK-01621     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4904155..4914484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1232_RS22950 (V1232_22950) uvrB 4905542..4907554 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  V1232_RS22955 (V1232_22955) - 4907742..4908938 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  V1232_RS22965 (V1232_22965) comEA/comE1 4909155..4909484 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  V1232_RS22970 (V1232_22970) - 4909675..4911672 (-) 1998 WP_010895647.1 polysaccharide biosynthesis protein -
  V1232_RS22975 (V1232_22975) - 4912237..4913358 (-) 1122 Protein_4534 IS3 family transposase -
  V1232_RS22980 (V1232_22980) - 4913436..4914455 (-) 1020 WP_003113413.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=843632 V1232_RS22965 WP_003091430.1 4909155..4909484(-) (comEA/comE1) [Pseudomonas aeruginosa strain 2023CK-01621]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=843632 V1232_RS22965 WP_003091430.1 4909155..4909484(-) (comEA/comE1) [Pseudomonas aeruginosa strain 2023CK-01621]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385