Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   QRA07_RS10855 Genome accession   NZ_CP127321
Coordinates   2318493..2318873 (-) Length   126 a.a.
NCBI ID   WP_002121425.1    Uniprot ID   A0A009HD22
Organism   Acinetobacter pittii strain PC870     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2313493..2323873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS10825 (QRA07_10855) tadA 2313495..2313999 (-) 505 Protein_2102 tRNA adenosine(34) deaminase TadA -
  QRA07_RS10830 (QRA07_10860) hibch 2314005..2315129 (-) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  QRA07_RS10835 (QRA07_10865) ung 2315126..2315839 (-) 714 WP_069119298.1 uracil-DNA glycosylase -
  QRA07_RS10840 (QRA07_10870) - 2315893..2316489 (-) 597 WP_017386831.1 6-carboxytetrahydropterin synthase -
  QRA07_RS10845 (QRA07_10875) gspK 2316718..2317677 (-) 960 WP_039761082.1 type II secretion system minor pseudopilin GspK -
  QRA07_RS10850 (QRA07_10880) xcpW 2317678..2318493 (-) 816 WP_233732401.1 type II secretion system minor pseudopilin GspJ Machinery gene
  QRA07_RS10855 (QRA07_10885) xcpV 2318493..2318873 (-) 381 WP_002121425.1 type II secretion system minor pseudopilin GspI Machinery gene
  QRA07_RS10860 (QRA07_10890) - 2318863..2319417 (-) 555 WP_002121405.1 type II secretion system protein -
  QRA07_RS10865 (QRA07_10895) - 2319424..2320032 (-) 609 WP_233732901.1 TetR/AcrR family transcriptional regulator -
  QRA07_RS10870 (QRA07_10900) ycfH 2320069..2320842 (-) 774 WP_057085323.1 TatD family hydrolase -
  QRA07_RS10875 (QRA07_10905) pilZ 2320860..2321201 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  QRA07_RS10880 (QRA07_10910) holB 2321212..2322192 (-) 981 WP_017482275.1 DNA polymerase III subunit delta' -
  QRA07_RS10885 (QRA07_10915) kdsB 2322206..2322967 (-) 762 WP_044100054.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=843411 QRA07_RS10855 WP_002121425.1 2318493..2318873(-) (xcpV) [Acinetobacter pittii strain PC870]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=843411 QRA07_RS10855 WP_002121425.1 2318493..2318873(-) (xcpV) [Acinetobacter pittii strain PC870]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACCAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAGAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTTGATTTACAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTGTTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937