Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QRA07_RS02990 Genome accession   NZ_CP127321
Coordinates   628811..629440 (-) Length   209 a.a.
NCBI ID   WP_233734103.1    Uniprot ID   -
Organism   Acinetobacter pittii strain PC870     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 623811..634440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS02955 (QRA07_02950) mlaE 624144..624920 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  QRA07_RS02960 (QRA07_02955) - 624920..625600 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  QRA07_RS02965 (QRA07_02960) - 625627..626268 (+) 642 WP_002116826.1 phospholipid-binding protein MlaC -
  QRA07_RS02970 (QRA07_02965) - 626280..626567 (+) 288 WP_002116926.1 lipid asymmetry maintenance protein MlaB -
  QRA07_RS02975 (QRA07_02970) - 626640..627653 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  QRA07_RS02980 (QRA07_02975) - 627812..628393 (+) 582 WP_233734101.1 TIGR00730 family Rossman fold protein -
  QRA07_RS02985 (QRA07_02980) mutT 628408..628809 (+) 402 WP_002116701.1 NUDIX domain-containing protein -
  QRA07_RS02990 (QRA07_02985) comF 628811..629440 (-) 630 WP_233734103.1 ComF family protein Machinery gene
  QRA07_RS02995 (QRA07_02990) recG 629433..631478 (-) 2046 WP_233734107.1 ATP-dependent DNA helicase RecG -
  QRA07_RS03000 (QRA07_02995) - 631499..632314 (+) 816 WP_233734116.1 NAD-dependent epimerase/dehydratase family protein -
  QRA07_RS03005 (QRA07_03000) - 632394..633377 (+) 984 WP_025468463.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24470.69 Da        Isoelectric Point: 10.0755

>NTDB_id=843402 QRA07_RS02990 WP_233734103.1 628811..629440(-) (comF) [Acinetobacter pittii strain PC870]
MFNFLNFQPLIQLFSPCSLCELGTREKYSLCKDCWEQLPWLKQTIQRNNLSVLVACNYAYPVNRIIQQFKYEQKVHYQIL
LGEIFKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIKRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATLKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=843402 QRA07_RS02990 WP_233734103.1 628811..629440(-) (comF) [Acinetobacter pittii strain PC870]
ATGTTTAATTTTTTAAACTTCCAACCTCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCACGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCTATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGGTACATTATCAGATCTTA
TTAGGTGAAATTTTCAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCA
AACGTTTAAACGAGCACTCTCAAAAAGGACTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCCCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCGGCAACACTAAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.495

98.565

0.823
  comF Acinetobacter baumannii D1279779

82.524

98.565

0.813