Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   V1209_RS06825 Genome accession   NZ_CP143255
Coordinates   1515675..1516934 (-) Length   419 a.a.
NCBI ID   WP_005598324.1    Uniprot ID   A0ABM6X5K8
Organism   Actinobacillus pleuropneumoniae strain ZJNH2023     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1510675..1521934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1209_RS06795 (V1209_06775) gltX 1511990..1513429 (+) 1440 WP_354731912.1 glutamate--tRNA ligase -
  V1209_RS06805 (V1209_06785) yefM 1513767..1514018 (+) 252 WP_005605062.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  V1209_RS06810 (V1209_06790) - 1514015..1514275 (+) 261 WP_009875288.1 Txe/YoeB family addiction module toxin -
  V1209_RS06815 (V1209_06795) - 1514432..1514599 (-) 168 WP_009875287.1 Trm112 family protein -
  V1209_RS06820 (V1209_06800) lpxK 1514601..1515581 (-) 981 WP_005608502.1 tetraacyldisaccharide 4'-kinase -
  V1209_RS06825 (V1209_06805) clpX 1515675..1516934 (-) 1260 WP_005598324.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  V1209_RS06830 (V1209_06810) clpP 1516934..1517524 (-) 591 WP_005598326.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  V1209_RS06835 (V1209_06815) - 1517646..1518038 (+) 393 WP_005620423.1 SufE family protein -
  V1209_RS06850 (V1209_06830) dnaQ 1518397..1519170 (-) 774 WP_009875285.1 DNA polymerase III subunit epsilon -
  V1209_RS06855 (V1209_06835) ettA 1519257..1520927 (-) 1671 WP_005618836.1 energy-dependent translational throttle protein EttA -
  V1209_RS06860 (V1209_06840) - 1521092..1521430 (+) 339 WP_005598331.1 carboxymuconolactone decarboxylase family protein -
  V1209_RS06865 (V1209_06845) - 1521423..1521791 (+) 369 WP_005598332.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46361.06 Da        Isoelectric Point: 5.1999

>NTDB_id=843316 V1209_RS06825 WP_005598324.1 1515675..1516934(-) (clpX) [Actinobacillus pleuropneumoniae strain ZJNH2023]
MANFEKEPHCSFCGKRRTEVDQLVEGTEGYICNHCIEESYALLNGEEEPLIDEKQDEQKFFENVPTPHEINAHLDEYVIG
QEHAKKVLSVAVYNHYKRLRNALSGHKETNGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGE
DVENVIQKLLMKCDFDAEQAERGIVFIDEIDKITRKSESPSITRDVSGEGVQQALLKLIEGTVANINPQGSRKHPKGETI
PVDTSKILFICGGAFAGLDKIVEARSNKQGGIGFGAELKKDKEREDLTELFKQVEPEDLVKFGLIPELIGRLPVVTPLQE
LDEEALIQILTEPKNAIIKQYQALFQMEGVELKFTKEALIAIAQKSISRKTGARGLRSIVENLLLDTMYNLPTLKAEKNV
KKVTVGKGCVENGDKPKVE

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=843316 V1209_RS06825 WP_005598324.1 1515675..1516934(-) (clpX) [Actinobacillus pleuropneumoniae strain ZJNH2023]
ATGGCAAATTTCGAGAAAGAACCGCATTGTAGTTTTTGTGGTAAAAGACGTACCGAAGTTGATCAACTGGTAGAAGGTAC
GGAAGGTTATATCTGTAATCACTGTATTGAAGAGTCTTACGCATTGTTAAACGGCGAAGAAGAACCGTTAATCGATGAAA
AACAGGATGAACAGAAGTTTTTTGAAAATGTGCCGACGCCACACGAGATCAATGCGCATTTAGATGAGTATGTTATCGGT
CAAGAGCATGCGAAAAAAGTGTTGTCCGTAGCGGTTTATAACCACTATAAACGTTTACGTAACGCGCTTTCCGGTCATAA
AGAAACCAACGGCGTAGAGTTGGGTAAAAGTAACATTTTATTAATCGGCCCGACCGGTAGCGGTAAAACCTTATTGGCGG
AAACGTTAGCGCGCCGTTTAAACGTACCCTTTGCGGTTGCGGATGCAACCACGCTGACGCAAGCCGGTTATGTCGGTGAA
GACGTAGAAAACGTGATTCAAAAATTACTGATGAAATGTGATTTTGATGCGGAACAAGCGGAACGCGGTATCGTCTTTAT
TGATGAGATTGACAAAATTACCCGTAAGTCGGAAAGCCCGTCGATTACCCGCGACGTATCCGGTGAAGGCGTGCAACAGG
CGTTATTAAAATTAATCGAAGGCACGGTAGCGAATATCAACCCGCAAGGCAGCCGTAAGCACCCGAAAGGCGAAACGATT
CCGGTCGATACCTCTAAAATCCTCTTTATTTGCGGCGGAGCGTTTGCCGGTTTAGATAAGATTGTCGAGGCTCGTAGTAA
CAAGCAAGGCGGAATCGGTTTTGGCGCAGAATTGAAAAAAGATAAAGAACGTGAAGATCTCACCGAGTTATTCAAACAAG
TTGAGCCGGAAGACTTGGTTAAATTCGGTTTAATTCCGGAGCTTATCGGTCGATTACCGGTTGTGACTCCGTTACAAGAA
CTGGATGAAGAAGCGTTAATTCAAATTTTAACCGAACCGAAAAATGCGATTATCAAGCAATATCAAGCATTATTCCAAAT
GGAAGGTGTTGAGCTGAAATTTACCAAAGAGGCGTTAATTGCAATCGCGCAGAAATCTATTTCACGCAAAACCGGTGCAC
GCGGTTTACGCTCGATTGTTGAGAATCTACTGTTAGATACGATGTATAACTTGCCGACACTTAAAGCAGAGAAAAATGTG
AAAAAAGTGACGGTTGGCAAAGGTTGTGTTGAAAACGGCGATAAGCCGAAAGTAGAGTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(9-44)

AAA domain (Cdc48 subfamily) (AAA_2)

(116-314)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(321-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

54.964

98.568

0.542
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.186

92.601

0.52