Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VYI52_RS05785 Genome accession   NZ_CP142949
Coordinates   1194542..1195279 (-) Length   245 a.a.
NCBI ID   WP_000197689.1    Uniprot ID   -
Organism   Escherichia coli strain EC190329     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1189542..1200279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYI52_RS05755 (VYI52_05755) yfiL 1189700..1190065 (-) 366 WP_001314943.1 DUF2799 domain-containing protein -
  VYI52_RS05760 (VYI52_05760) aroF 1190275..1191345 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  VYI52_RS05765 (VYI52_05765) tyrA 1191356..1192477 (+) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  VYI52_RS05770 (VYI52_05770) pheA 1192520..1193680 (-) 1161 WP_020233815.1 bifunctional chorismate mutase/prephenate dehydratase -
  VYI52_RS05775 (VYI52_05775) pheL 1193779..1193826 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  VYI52_RS05780 (VYI52_05780) raiA 1193930..1194271 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  VYI52_RS05785 (VYI52_05785) comL 1194542..1195279 (-) 738 WP_000197689.1 outer membrane protein assembly factor BamD Machinery gene
  VYI52_RS05790 (VYI52_05790) rluD 1195414..1196394 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VYI52_RS05795 (VYI52_05795) yfiH 1196391..1197122 (+) 732 WP_001520329.1 purine nucleoside phosphorylase YfiH -
  VYI52_RS05800 (VYI52_05800) clpC 1197252..1199825 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.45 Da        Isoelectric Point: 7.9331

>NTDB_id=842970 VYI52_RS05785 WP_000197689.1 1194542..1195279(-) (comL) [Escherichia coli strain EC190329]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAKYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=842970 VYI52_RS05785 WP_000197689.1 1194542..1195279(-) (comL) [Escherichia coli strain EC190329]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCAAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376