Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QN060_RS17215 Genome accession   NZ_CP127225
Coordinates   3764040..3765434 (+) Length   464 a.a.
NCBI ID   WP_285956669.1    Uniprot ID   A0AAJ6KHH9
Organism   Xanthomonas oryzae pv. leersiae strain YNJC     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3759040..3770434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN060_RS17195 (QN060_17190) - 3759176..3759382 (-) 207 WP_131085157.1 hypothetical protein -
  QN060_RS17200 (QN060_17195) sucD 3759793..3760668 (-) 876 WP_019300808.1 succinate--CoA ligase subunit alpha -
  QN060_RS17205 (QN060_17200) sucC 3760693..3761862 (-) 1170 WP_019300809.1 ADP-forming succinate--CoA ligase subunit beta -
  QN060_RS17210 (QN060_17205) - 3762096..3763709 (+) 1614 WP_131085159.1 HAMP domain-containing sensor histidine kinase -
  QN060_RS17215 (QN060_17210) pilR 3764040..3765434 (+) 1395 WP_285956669.1 sigma-54 dependent transcriptional regulator Regulator
  QN060_RS17220 (QN060_17215) - 3765431..3765952 (+) 522 WP_285956670.1 Fic family protein -
  QN060_RS17225 (QN060_17220) pilB 3765961..3767694 (-) 1734 WP_285956671.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QN060_RS17230 (QN060_17225) - 3767729..3768148 (-) 420 Protein_3276 hypothetical protein -
  QN060_RS17235 (QN060_17230) - 3768202..3769218 (+) 1017 WP_082324130.1 IS30 family transposase -
  QN060_RS17240 (QN060_17235) - 3769227..3770333 (-) 1107 Protein_3278 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50210.61 Da        Isoelectric Point: 6.4499

>NTDB_id=842860 QN060_RS17215 WP_285956669.1 3764040..3765434(+) (pilR) [Xanthomonas oryzae pv. leersiae strain YNJC]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPHTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGELVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGNAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=842860 QN060_RS17215 WP_285956669.1 3764040..3765434(+) (pilR) [Xanthomonas oryzae pv. leersiae strain YNJC]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGGGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAACTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCTTGCCCGACGGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAATACCCGCATACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCACCGCCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGTCAGGCGCCGGTCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGC
CTCCGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGAACTGGTCTCCGACGGCCGTT
TTCGACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGA
CGCACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCC
GTGGAACCACGCGAAGCTGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAGTTAGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

99.784

0.631
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489