Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VYI63_RS22495 Genome accession   NZ_CP142930
Coordinates   4563348..4564085 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain B20123     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4558348..4569085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYI63_RS22465 (VYI63_22465) yfiL 4558507..4558872 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  VYI63_RS22470 (VYI63_22470) aroF 4559082..4560152 (+) 1071 WP_001168025.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  VYI63_RS22475 (VYI63_22475) tyrA 4560163..4561284 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  VYI63_RS22480 (VYI63_22480) pheA 4561327..4562487 (-) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  VYI63_RS22485 (VYI63_22485) pheL 4562586..4562633 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  VYI63_RS22490 (VYI63_22490) raiA 4562737..4563078 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  VYI63_RS22495 (VYI63_22495) comL 4563348..4564085 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  VYI63_RS22500 (VYI63_22500) rluD 4564220..4565200 (+) 981 WP_000079096.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VYI63_RS22505 (VYI63_22505) yfiH 4565197..4565928 (+) 732 WP_000040118.1 purine nucleoside phosphorylase YfiH -
  VYI63_RS22510 (VYI63_22510) clpC 4566058..4568631 (+) 2574 WP_001350770.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=842769 VYI63_RS22495 WP_000197686.1 4563348..4564085(-) (comL) [Escherichia coli strain B20123]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=842769 VYI63_RS22495 WP_000197686.1 4563348..4564085(-) (comL) [Escherichia coli strain B20123]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376