Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DBT39_RS00085 Genome accession   NZ_CP127213
Coordinates   19519..20091 (+) Length   190 a.a.
NCBI ID   WP_064292227.1    Uniprot ID   -
Organism   Aerococcus loyolae strain UMB0509     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 14519..25091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBT39_RS00060 (DBT39_00060) - 14963..15952 (-) 990 WP_064292745.1 asparaginase -
  DBT39_RS00065 (DBT39_00065) - 15995..17413 (-) 1419 WP_168162787.1 YfcC family protein -
  DBT39_RS00070 (DBT39_00070) - 17406..17759 (-) 354 WP_111818604.1 M20/M25/M40 family metallo-hydrolase -
  DBT39_RS00075 (DBT39_00075) - 17705..18706 (-) 1002 WP_111818605.1 amidohydrolase -
  DBT39_RS00080 (DBT39_00080) rpsF 19181..19483 (+) 303 WP_013669618.1 30S ribosomal protein S6 -
  DBT39_RS00085 (DBT39_00085) ssb 19519..20091 (+) 573 WP_064292227.1 single-stranded DNA-binding protein Machinery gene
  DBT39_RS00090 (DBT39_00090) rpsR 20119..20358 (+) 240 WP_013669454.1 30S ribosomal protein S18 -
  DBT39_RS00095 (DBT39_00095) - 20587..20796 (+) 210 WP_013669762.1 helix-turn-helix transcriptional regulator -
  DBT39_RS00100 (DBT39_00100) - 20780..21298 (+) 519 WP_064292226.1 DUF3278 domain-containing protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20872.48 Da        Isoelectric Point: 4.2964

>NTDB_id=842674 DBT39_RS00085 WP_064292227.1 19519..20091(+) (ssb) [Aerococcus loyolae strain UMB0509]
MINNVVLVGRLTREVDLRYTQSGTAVANFTVACDRNYRNAQGETQTDFINCVMWRKAAENFAKFTRKGSLVGIEGNIQTR
NYENQQGQRVYVTEVLANNFSLLEPKSVTEQRPQGSDNGNNFANPGNNFANDSFGSNQSFGGYNNQQDSPSMNDNSFGGS
NDPFAGGNNNPFPSNDNDGSINIADDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=842674 DBT39_RS00085 WP_064292227.1 19519..20091(+) (ssb) [Aerococcus loyolae strain UMB0509]
ATGATTAATAATGTCGTCTTAGTCGGCCGATTAACTCGGGAAGTTGATCTACGTTATACCCAAAGTGGAACTGCAGTAGC
CAACTTTACTGTAGCTTGTGACCGTAACTACCGCAATGCCCAAGGTGAAACCCAAACAGATTTCATCAATTGTGTGATGT
GGCGTAAAGCTGCTGAAAACTTTGCTAAATTTACACGGAAAGGTTCTTTGGTAGGGATTGAAGGCAATATTCAAACCCGT
AACTACGAAAACCAACAAGGCCAACGTGTTTATGTGACTGAAGTCTTAGCAAATAACTTTAGCTTACTGGAACCTAAGAG
TGTCACTGAACAACGCCCACAAGGCAGTGACAATGGCAATAACTTTGCCAACCCAGGCAATAATTTTGCGAATGACTCTT
TTGGCTCTAATCAAAGCTTTGGCGGCTATAATAATCAACAAGATTCCCCTTCAATGAATGATAACAGCTTTGGTGGATCC
AACGACCCATTTGCTGGTGGAAACAATAATCCTTTCCCATCAAATGATAATGACGGATCGATCAATATCGCTGATGATGA
TCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.404

100

0.553
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.705

100

0.495