Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | QQX50_RS23255 | Genome accession | NZ_CP127124 |
| Coordinates | 5013661..5014533 (+) | Length | 290 a.a. |
| NCBI ID | WP_003112839.1 | Uniprot ID | P22610 |
| Organism | Pseudomonas aeruginosa strain PA01_BIM | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5008661..5019533
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQX50_RS23230 (QQX50_23230) | nadC | 5009002..5009850 (+) | 849 | WP_003104915.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| QQX50_RS23240 (QQX50_23240) | pilA | 5010052..5010501 (-) | 450 | WP_025768757.1 | type 4a pilus biogenesis protein PilA | Machinery gene |
| QQX50_RS23245 (QQX50_23245) | pilB | 5010733..5012433 (+) | 1701 | WP_003112841.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QQX50_RS23250 (QQX50_23250) | pilC | 5012437..5013657 (+) | 1221 | WP_003112840.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| QQX50_RS23255 (QQX50_23255) | pilD | 5013661..5014533 (+) | 873 | WP_003112839.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| QQX50_RS23260 (QQX50_23260) | coaE | 5014530..5015141 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| QQX50_RS23265 (QQX50_23265) | yacG | 5015138..5015338 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| QQX50_RS23270 (QQX50_23270) | - | 5015375..5015584 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| QQX50_RS23275 (QQX50_23275) | - | 5015690..5016379 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| QQX50_RS23280 (QQX50_23280) | - | 5016376..5016846 (-) | 471 | WP_003103866.1 | hypothetical protein | - |
| QQX50_RS23285 (QQX50_23285) | - | 5016843..5017268 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| QQX50_RS23290 (QQX50_23290) | - | 5017401..5018030 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| QQX50_RS23295 (QQX50_23295) | - | 5018027..5018476 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| QQX50_RS23300 (QQX50_23300) | - | 5018502..5018672 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31869.92 Da Isoelectric Point: 7.7068
>NTDB_id=842022 QQX50_RS23255 WP_003112839.1 5013661..5014533(+) (pilD) [Pseudomonas aeruginosa strain PA01_BIM]
MPLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=842022 QQX50_RS23255 WP_003112839.1 5013661..5014533(+) (pilD) [Pseudomonas aeruginosa strain PA01_BIM]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.357 |
96.552 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
52.65 |
97.586 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
50.19 |
90.69 |
0.455 |